Or1e1f (olfactory receptor family 1 subfamily E member 1F) - Rat Genome Database

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Gene: Or1e1f (olfactory receptor family 1 subfamily E member 1F) Mus musculus
Analyze
No known orthologs.
Symbol: Or1e1f
Name: olfactory receptor family 1 subfamily E member 1F
RGD ID: 1616493
MGI Page MGI
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GA_x6K02T2P1NL-4121434-4122381; MOR135-; MOR135-28; olfactory receptor 397; olfactory receptor MOR135-28; Olfr397; RP23-360H16.7
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,855,436 - 73,856,383 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,851,643 - 73,858,638 (+)EnsemblGRCm39 Ensembl
GRCm381173,964,610 - 73,965,557 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,960,817 - 73,967,812 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,778,112 - 73,779,059 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,780,805 - 73,781,752 (+)NCBIMGSCv36mm8
Celera1181,498,063 - 81,499,010 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1145.67NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10706615   PMID:11170746   PMID:11802173   PMID:11875048   PMID:12477932   PMID:14611657   PMID:21873635   PMID:32295537  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:103
Count of miRNA genes:100
Interacting mature miRNAs:103
Transcripts:ENSMUST00000108465
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117220979684731462Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117373754182069425Mouse

Markers in Region
UniSTS:495339  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,964,530 - 73,965,620UniSTSGRCm38
MGSCv371173,778,032 - 73,779,122UniSTSGRCm37
Celera1181,497,983 - 81,499,073UniSTS
Cytogenetic Map11B4UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000121280   ⟹   ENSMUSP00000113870
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1173,855,356 - 73,856,446 (+)Ensembl
GRCm38.p6 Ensembl1173,964,530 - 73,965,620 (+)Ensembl
RefSeq Acc Id: ENSMUST00000213134   ⟹   ENSMUSP00000150369
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1173,851,643 - 73,858,638 (+)Ensembl
GRCm38.p6 Ensembl1173,960,817 - 73,967,812 (+)Ensembl
RefSeq Acc Id: ENSMUST00000215020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1173,851,716 - 73,858,638 (+)Ensembl
GRCm38.p6 Ensembl1173,960,890 - 73,967,812 (+)Ensembl
RefSeq Acc Id: ENSMUST00000216291   ⟹   ENSMUSP00000150172
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1173,851,643 - 73,858,638 (+)Ensembl
GRCm38.p6 Ensembl1173,960,817 - 73,967,812 (+)Ensembl
RefSeq Acc Id: NM_146346   ⟹   NP_666458
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391173,855,436 - 73,856,383 (+)NCBI
GRCm381173,964,610 - 73,965,557 (+)ENTREZGENE
MGSCv371173,778,112 - 73,779,059 (+)RGD
Celera1181,498,063 - 81,499,010 (+)RGD
cM Map11 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_666458   ⟸   NM_146346
- UniProtKB: Q8VEZ6 (UniProtKB/TrEMBL),   B2FDE2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000113870   ⟸   ENSMUST00000121280
RefSeq Acc Id: ENSMUSP00000150369   ⟸   ENSMUST00000213134
RefSeq Acc Id: ENSMUSP00000150172   ⟸   ENSMUST00000216291
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VEZ6-F1-model_v2 AlphaFold Q8VEZ6 1-315 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3030231 AgrOrtholog
Ensembl Genes ENSMUSG00000057050 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000121280 ENTREZGENE
  ENSMUST00000121280.3 UniProtKB/TrEMBL
  ENSMUST00000213134.2 UniProtKB/TrEMBL
  ENSMUST00000216291.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report mmu:258343 UniProtKB/TrEMBL
MGD MGI:3030231 ENTREZGENE
NCBI Gene 258343 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or1e1f PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt B2FDE2 ENTREZGENE
  Q8VEZ6 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B2FDE2 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or1e1f  olfactory receptor family 1 subfamily E member 1F  Olfr397  olfactory receptor 397  Symbol and/or name change 5135510 APPROVED