Vmn2r53 (vomeronasal 2, receptor 53) - Rat Genome Database

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Gene: Vmn2r53 (vomeronasal 2, receptor 53) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn2r53
Name: vomeronasal 2, receptor 53
RGD ID: 1616248
MGI Page MGI
Description: Predicted to enable G protein-coupled receptor activity. Predicted to be active in plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EG637908; gene model 471, (NCBI); Gm471; vomeronasal receptor Vmn2r53
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39712,315,397 - 12,342,583 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl712,296,778 - 12,342,715 (-)EnsemblGRCm39 Ensembl
GRCm38712,581,470 - 12,606,544 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl712,562,851 - 12,608,788 (-)EnsemblGRCm38mm10GRCm38
MGSCv37713,166,819 - 13,191,893 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36711,487,334 - 11,514,520 (-)NCBIMGSCv36mm8
Celera710,204,100 - 10,234,977 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map77.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Benoxacor  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References
Additional References at PubMed
PMID:17382427   PMID:21267068   PMID:21873635   PMID:26073538   PMID:35654036  


Genomics

Variants

.
Variants in Vmn2r53
1027 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:52
Interacting mature miRNAs:52
Transcripts:ENSMUST00000170412
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse

Markers in Region
AU015605  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38712,603,556 - 12,603,682UniSTSGRCm38
MGSCv37713,188,905 - 13,189,031UniSTSGRCm37
Celera710,231,990 - 10,232,116UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4C3UniSTS
Whitehead/MRC_RH7149.34UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000170412   ⟹   ENSMUSP00000126979
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,315,397 - 12,340,471 (-)Ensembl
GRCm38.p6 Ensembl712,581,470 - 12,606,544 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232701   ⟹   ENSMUSP00000156421
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,296,778 - 12,342,715 (-)Ensembl
GRCm38.p6 Ensembl712,562,851 - 12,608,788 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233892   ⟹   ENSMUSP00000156838
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,296,778 - 12,342,715 (-)Ensembl
GRCm38.p6 Ensembl712,562,851 - 12,608,788 (-)Ensembl
RefSeq Acc Id: NM_001104644   ⟹   NP_001098114
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39712,315,397 - 12,342,583 (-)NCBI
GRCm38712,581,470 - 12,606,544 (-)NCBI
MGSCv37713,166,819 - 13,191,893 (-)RGD
Celera710,204,100 - 10,234,977 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036153322   ⟹   XP_036009215
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39712,315,397 - 12,342,583 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001098114 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009215 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000126979.2
  ENSMUSP00000156421.2
  ENSMUSP00000156838
  ENSMUSP00000156838.2
RefSeq Acc Id: NP_001098114   ⟸   NM_001104644
- Peptide Label: precursor
- UniProtKB: A0A3B2W4A7 (UniProtKB/TrEMBL),   L7N473 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000126979   ⟸   ENSMUST00000170412
RefSeq Acc Id: ENSMUSP00000156838   ⟸   ENSMUST00000233892
RefSeq Acc Id: ENSMUSP00000156421   ⟸   ENSMUST00000232701
RefSeq Acc Id: XP_036009215   ⟸   XM_036153322
- Peptide Label: isoform X1
- UniProtKB: L7N473 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A3B2W4A7-F1-model_v2 AlphaFold A0A3B2W4A7 1-878 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3644480 AgrOrtholog
Ensembl Genes ENSMUSG00000096002 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000170412.2 UniProtKB/TrEMBL
  ENSMUST00000232701.2 UniProtKB/TrEMBL
  ENSMUST00000233892 ENTREZGENE
  ENSMUST00000233892.2 UniProtKB/TrEMBL
Gene3D-CATH 2.10.50.30 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  GPCR_3 UniProtKB/TrEMBL
  GPCR_3_9-Cys_dom UniProtKB/TrEMBL
  GPCR_3_9-Cys_sf UniProtKB/TrEMBL
  GPCR_3_C UniProtKB/TrEMBL
  GPCR_3_Ca_sens_rcpt-rel UniProtKB/TrEMBL
  GPCR_3_CS UniProtKB/TrEMBL
  GPCR_3_vmron_rcpt_2 UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
KEGG Report mmu:637908 UniProtKB/TrEMBL
MGD MGI:3644480 ENTREZGENE
NCBI Gene 637908 ENTREZGENE
PANTHER PTHR24061 UniProtKB/TrEMBL
  VOMERONASAL 2, RECEPTOR 53-RELATED UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
  ANF_receptor UniProtKB/TrEMBL
  NCD3G UniProtKB/TrEMBL
PhenoGen Vmn2r53 PhenoGen
PRINTS GPCRMGR UniProtKB/TrEMBL
  VOMERONASL2R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F3_2 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F3_4 UniProtKB/TrEMBL
Superfamily-SCOP SSF53822 UniProtKB/TrEMBL
UniProt A0A3B2W4A7 ENTREZGENE, UniProtKB/TrEMBL
  A0A3B2W7B9_MOUSE UniProtKB/TrEMBL
  L7N473 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Vmn2r53  vomeronasal 2, receptor 53  Gm471  gene model 471, (NCBI)  Data merged from RGD:1642260 737654 PROVISIONAL