Cnn2 (calponin 2) - Rat Genome Database

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Gene: Cnn2 (calponin 2) Mus musculus
Analyze
Symbol: Cnn2
Name: calponin 2
RGD ID: 1616005
MGI Page MGI
Description: Predicted to enable actin filament binding activity. Acts upstream of or within several processes, including negative regulation of macrophage migration; negative regulation of phagocytosis; and regulation of mononuclear cell proliferation. Predicted to be located in stress fiber. Predicted to be active in actin cytoskeleton. Is expressed in several structures, including allantois; central nervous system; eye; forelimb; and lateral plate mesoderm. Orthologous to human CNN2 (calponin 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA408047; AI324678; Ca; Calpo2; calponin H2, smooth muscle; calponin-2; h2-c; h2-calponin; neutral calponin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Cnn2-ps   Gm17843   Gm17874   Gm8056  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,824,434 - 79,831,234 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,824,418 - 79,831,896 (+)EnsemblGRCm39 Ensembl
GRCm381079,988,600 - 79,995,400 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1079,988,584 - 79,996,062 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,451,345 - 79,458,145 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,391,763 - 79,398,518 (+)NCBIMGSCv36mm8
Celera1081,003,407 - 81,010,207 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (EXP)
1,2-dimethylhydrazine  (EXP)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (EXP,ISO)
amitrole  (ISO)
andrographolide  (EXP)
benzo[a]pyrene  (EXP)
beta-naphthoflavone  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
caffeine  (EXP)
calcitriol  (ISO)
chlorpyrifos  (EXP)
cisplatin  (EXP)
clotrimazole  (ISO)
cobalt dichloride  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
dexamethasone  (EXP)
dextran sulfate  (EXP)
diazinon  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dioxygen  (EXP)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
fenamidone  (EXP)
folic acid  (EXP)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
isobutanol  (ISO)
ivermectin  (ISO)
leflunomide  (ISO)
methimazole  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
niclosamide  (ISO)
nicotine  (EXP)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP,ISO)
pirinixic acid  (EXP)
propanal  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
trichloroethene  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (EXP)
ziram  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8370452   PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11180952   PMID:11217851   PMID:11357193   PMID:12388067   PMID:12466851   PMID:12477932   PMID:14610273  
PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16236705   PMID:16602821   PMID:16829211   PMID:18617524   PMID:18973680   PMID:20534673   PMID:21068062   PMID:21677750  
PMID:21873635   PMID:22083510   PMID:23213427   PMID:24285540   PMID:24614889   PMID:26046660   PMID:27575021   PMID:27733037   PMID:28191821   PMID:28378742   PMID:28535371   PMID:29165602  
PMID:29967264   PMID:30053524   PMID:30707993   PMID:31162944   PMID:31358778   PMID:31992794   PMID:32325033   PMID:32483447   PMID:33622156   PMID:34133238   PMID:36117313   PMID:36963615  
PMID:37751293   PMID:38336796  


Genomics

Comparative Map Data
Cnn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,824,434 - 79,831,234 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,824,418 - 79,831,896 (+)EnsemblGRCm39 Ensembl
GRCm381079,988,600 - 79,995,400 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1079,988,584 - 79,996,062 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,451,345 - 79,458,145 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,391,763 - 79,398,518 (+)NCBIMGSCv36mm8
Celera1081,003,407 - 81,010,207 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
CNN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38191,026,608 - 1,039,065 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl191,026,586 - 1,039,068 (+)EnsemblGRCh38hg38GRCh38
GRCh37191,026,607 - 1,039,064 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3619977,298 - 990,064 (+)NCBINCBI36Build 36hg18NCBI36
Build 3419977,297 - 990,063NCBI
Celera19958,638 - 969,897 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef19799,427 - 811,654 (+)NCBIHuRef
CHM1_1191,025,455 - 1,037,339 (+)NCBICHM1_1
T2T-CHM13v2.019989,277 - 1,001,734 (+)NCBIT2T-CHM13v2.0
Cnn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,363,141 - 10,370,312 (-)NCBIGRCr8
mRatBN7.279,712,505 - 9,719,678 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,712,516 - 9,719,656 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx712,594,690 - 12,601,905 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,470,026 - 14,477,227 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,331,153 - 12,338,424 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,782,459 - 12,787,977 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,782,491 - 12,787,750 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,952,193 - 12,957,718 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4711,223,451 - 11,232,524 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera77,888,183 - 7,895,312 (-)NCBICelera
Cytogenetic Map7q11NCBI
Cnn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,839,436 - 6,848,207 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,839,436 - 6,848,208 (-)NCBIChiLan1.0ChiLan1.0
CNN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2205,356,334 - 5,373,918 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,595,936 - 4,610,232 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01040,502,394 - 40,504,543 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1191,005,670 - 1,015,133 (+)NCBIpanpan1.1PanPan1.1panPan2
CNN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,684,959 - 57,691,621 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,637,796 - 57,691,896 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,487,080 - 57,493,718 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02058,426,988 - 58,433,632 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2058,426,991 - 58,433,910 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12057,482,356 - 57,488,965 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02057,961,891 - 57,968,481 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02058,164,870 - 58,171,514 (-)NCBIUU_Cfam_GSD_1.0
Cnn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,375,132 - 217,380,885 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936588453,876 - 460,015 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936588453,908 - 459,916 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,375,983 - 77,385,571 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1277,376,020 - 77,385,594 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,612,076 - 77,621,630 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_0236660818,122,406 - 8,139,092 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cnn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248287,593,116 - 7,601,680 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248287,594,995 - 7,601,639 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cnn2
192 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:737
Count of miRNA genes:479
Interacting mature miRNAs:535
Transcripts:ENSMUST00000004784, ENSMUST00000105374
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7398721682491121Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse

Markers in Region
RH125760  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381079,995,185 - 79,995,396UniSTSGRCm38
MGSCv371079,457,930 - 79,458,141UniSTSGRCm37
Celera1081,009,992 - 81,010,203UniSTS
Cytogenetic Map10C1UniSTS
Whitehead/MRC_RH10917.97UniSTS
Cnn2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381079,995,094 - 79,995,159UniSTSGRCm38
MGSCv371079,457,839 - 79,457,904UniSTSGRCm37
Celera1081,009,901 - 81,009,966UniSTS
Cytogenetic Map10C1UniSTS
cM Map10 UniSTS
Z19543  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381934,625,121 - 34,625,295UniSTSGRCm38
GRCm381079,995,139 - 79,995,322UniSTSGRCm38
MGSCv371934,699,611 - 34,699,785UniSTSGRCm37
MGSCv371079,457,884 - 79,458,067UniSTSGRCm37
Celera1935,399,324 - 35,399,498UniSTS
Celera1081,009,946 - 81,010,129UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_007725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC151846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE656517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB590846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000004784   ⟹   ENSMUSP00000004784
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,824,418 - 79,831,896 (+)Ensembl
GRCm38.p6 Ensembl1079,988,584 - 79,996,062 (+)Ensembl
RefSeq Acc Id: ENSMUST00000105374   ⟹   ENSMUSP00000101013
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,824,457 - 79,830,518 (+)Ensembl
GRCm38.p6 Ensembl1079,988,623 - 79,994,684 (+)Ensembl
RefSeq Acc Id: NM_007725   ⟹   NP_031751
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,824,434 - 79,831,234 (+)NCBI
GRCm381079,988,600 - 79,995,400 (+)ENTREZGENE
MGSCv371079,451,345 - 79,458,145 (+)RGD
Celera1081,003,407 - 81,010,207 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_031751   ⟸   NM_007725
- UniProtKB: Q08093 (UniProtKB/Swiss-Prot),   Q543F3 (UniProtKB/TrEMBL),   D3Z7R6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000101013   ⟸   ENSMUST00000105374
RefSeq Acc Id: ENSMUSP00000004784   ⟸   ENSMUST00000004784
Protein Domains
Calponin-homology (CH)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q08093-F1-model_v2 AlphaFold Q08093 1-305 view protein structure

Promoters
RGD ID:6819117
Promoter ID:MM_KWN:4809
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000105374,   OTTMUST00000045857
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,450,611 - 79,451,562 (+)MPROMDB
RGD ID:6846707
Promoter ID:MM_ACW:5333
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   Brain,   Lung,   MEF_B4,   MEF_B6
Transcripts:CNN2.FSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,452,571 - 79,453,942 (+)MPROMDB
RGD ID:8672588
Promoter ID:EPDNEW_M14325
Type:initiation region
Name:Cnn2_1
Description:Mus musculus calponin 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381079,988,637 - 79,988,697EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:105093 AgrOrtholog
Ensembl Genes ENSMUSG00000004665 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000004784 ENTREZGENE
  ENSMUST00000004784.11 UniProtKB/Swiss-Prot
  ENSMUST00000105374.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Calponin/LIMCH1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calponin_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM22_calponin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12798 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:105093 ENTREZGENE
NCBI Gene 12798 ENTREZGENE
PANTHER CALPONIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CALPONIN UniProtKB/TrEMBL
  CALPONIN-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Calponin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00307 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cnn2 PhenoGen
PRINTS CALPONIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM22CALPONIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CALPONIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CALPONIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50021 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00033 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CNN2_MOUSE UniProtKB/Swiss-Prot
  D3Z7R6 ENTREZGENE, UniProtKB/TrEMBL
  Q08093 ENTREZGENE
  Q543F3 ENTREZGENE, UniProtKB/TrEMBL
  Q922F8_MOUSE UniProtKB/TrEMBL