Elovl1 (ELOVL fatty acid elongase 1) - Rat Genome Database

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Gene: Elovl1 (ELOVL fatty acid elongase 1) Mus musculus
Analyze
Symbol: Elovl1
Name: ELOVL fatty acid elongase 1 (Ensembl:elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1)
RGD ID: 1615926
MGI Page MGI
Description: Predicted to enable fatty acid elongase activity. Involved in ceramide biosynthetic process and establishment of skin barrier. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including genitourinary system; liver; skin; spleen; and upper jaw. Orthologous to human ELOVL1 (ELOVL fatty acid elongase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3-keto acyl-CoA synthase Elovl1; AA407424; BB151133; elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1; elongation of very long chain fatty acids protein 1; elongation of very long chain fatty acids-like 1; ELOVL FA elongase 1; sequence similarity to Cig30 1; Ss; Ssc1; very long chain 3-ketoacyl-CoA synthase 1; very long chain 3-oxoacyl-CoA synthase 1; very long chain fatty acid elongase 1; very-long-chain 3-oxoacyl-CoA synthase 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394118,285,321 - 118,290,150 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4118,285,290 - 118,290,150 (+)EnsemblGRCm39 Ensembl
GRCm384118,426,874 - 118,432,953 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4118,428,093 - 118,432,953 (+)EnsemblGRCm38mm10GRCm38
MGSCv374118,100,698 - 118,105,521 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364117,926,025 - 117,930,848 (+)NCBIMGSCv36mm8
Celera4117,153,631 - 117,158,454 (+)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map454.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-alpha-phellandrene  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-(4-chlorophenyl)imidazo[2,1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime  (ISO)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
alpha-phellandrene  (ISO)
alpha-pinene  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzalkonium chloride  (ISO)
benzo[a]pyrene  (EXP)
benzo[b]fluoranthene  (EXP)
Benzo[k]fluoranthene  (EXP)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlormequat chloride  (ISO)
chloroprene  (EXP)
chlorpyrifos  (EXP)
copper(II) chloride  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
cyproconazole  (EXP)
diazinon  (ISO)
dibutyl phthalate  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
fenamidone  (EXP)
fluoranthene  (EXP)
folic acid  (EXP)
fonofos  (ISO)
furan  (ISO)
genistein  (ISO)
gentamycin  (ISO)
GW 4064  (ISO)
GW 7647  (ISO)
hydrogen cyanide  (EXP)
indole-3-methanol  (ISO)
isoprenaline  (EXP)
isotretinoin  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
obeticholic acid  (ISO)
ozone  (EXP,ISO)
paracetamol  (ISO)
parathion  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
potassium cyanide  (EXP)
progesterone  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (EXP)
SB 431542  (ISO)
senecionine  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
tamoxifen  (EXP)
terbufos  (ISO)
tetraphene  (EXP)
Theaflavin 3,3'-digallate  (EXP)
trichostatin A  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10791983   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11891222   PMID:12466851   PMID:12477932   PMID:12819125   PMID:14610273  
PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16949565   PMID:18799693   PMID:19624305   PMID:20253178   PMID:20937905   PMID:21267068   PMID:21574244  
PMID:21677750   PMID:21873635   PMID:22579584   PMID:23689133   PMID:25269881   PMID:27760309   PMID:28369476   PMID:29174370   PMID:29401594   PMID:30251650   PMID:31356814   PMID:32554809  
PMID:32968282   PMID:33069870   PMID:34616039   PMID:37054712  


Genomics

Comparative Map Data
Elovl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394118,285,321 - 118,290,150 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4118,285,290 - 118,290,150 (+)EnsemblGRCm39 Ensembl
GRCm384118,426,874 - 118,432,953 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4118,428,093 - 118,432,953 (+)EnsemblGRCm38mm10GRCm38
MGSCv374118,100,698 - 118,105,521 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364117,926,025 - 117,930,848 (+)NCBIMGSCv36mm8
Celera4117,153,631 - 117,158,454 (+)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map454.61NCBI
ELOVL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38143,363,401 - 43,368,011 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl143,363,398 - 43,368,074 (-)EnsemblGRCh38hg38GRCh38
GRCh37143,829,072 - 43,833,682 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36143,601,659 - 43,606,286 (-)NCBINCBI36Build 36hg18NCBI36
Build 34143,498,165 - 43,502,792NCBI
Celera142,111,226 - 42,115,853 (-)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef141,948,810 - 41,953,487 (-)NCBIHuRef
CHM1_1143,945,527 - 43,950,204 (-)NCBICHM1_1
T2T-CHM13v2.0143,233,949 - 43,238,559 (-)NCBIT2T-CHM13v2.0
Elovl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85137,246,781 - 137,251,351 (+)NCBIGRCr8
mRatBN7.25131,961,478 - 131,965,961 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5131,961,322 - 131,965,958 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5134,670,003 - 134,673,190 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05136,424,640 - 136,427,827 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05136,447,038 - 136,450,225 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05137,255,868 - 137,260,486 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5137,255,908 - 137,260,483 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05141,046,751 - 141,049,947 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45138,909,438 - 138,912,186 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5130,508,244 - 130,511,440 (+)NCBICelera
Cytogenetic Map5q36NCBI
Elovl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555372,945,509 - 2,950,146 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555372,945,509 - 2,950,146 (-)NCBIChiLan1.0ChiLan1.0
ELOVL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21183,424,960 - 183,446,629 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11182,566,350 - 182,588,012 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0142,664,818 - 42,686,475 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1144,044,693 - 44,064,111 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl144,044,693 - 44,048,769 (-)Ensemblpanpan1.1panPan2
ELOVL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11516,798,305 - 16,803,071 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1516,798,370 - 16,802,899 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1516,925,313 - 16,930,087 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01516,965,026 - 16,969,802 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1516,965,100 - 16,969,969 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11516,757,503 - 16,762,275 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01516,826,506 - 16,831,275 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01516,900,074 - 16,904,850 (+)NCBIUU_Cfam_GSD_1.0
Elovl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505858,940,387 - 58,945,152 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647424,764,718 - 24,769,947 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647424,765,173 - 24,769,903 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELOVL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6167,881,352 - 167,886,124 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16167,881,357 - 167,886,125 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26155,333,073 - 155,340,903 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ELOVL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12089,444,146 - 89,448,802 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603327,472,819 - 27,477,500 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Elovl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248922,675,421 - 2,684,622 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248922,679,872 - 2,684,499 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Elovl1
104 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1415
Count of miRNA genes:574
Interacting mature miRNAs:682
Transcripts:ENSMUST00000006557, ENSMUST00000067896, ENSMUST00000102673, ENSMUST00000129419, ENSMUST00000135162, ENSMUST00000143140, ENSMUST00000167636
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485428838119429037Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485781167119781279Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485781167119781279Mouse
27226716Metcl2_mmetatarsal-calcaneal length 2, 5 week (mouse)488118237118557197Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)489888237118857197Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined489969627123969747Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490590668124590781Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)490882780124882780Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494732255128732454Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined494957579128009280Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498545539128009280Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100071971134072206Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100071971134072206Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4100857197124893793Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
1300689Dob1_mDietary obesity 1 (mouse)Body weight4101574601123127211Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109658132133154782Mouse
13208565Bmiq6_mbody mass index QTL 6 (mouse)4110857197125893793Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
1300655Nidds_mnon-insulin-dependent diabetes mellitus in SJL (mouse)Not determined4115030777129465915Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1301996Mmtg2_mmodifier of mammary tumor growth 2 (mouse)Not determined4116270979124055180Mouse
4141330Iva1_misovaleric acid smelling 1 (mouse)Not determined117071971120723203Mouse
12904006Cfq1_mconditioned fear QTL 1 (mouse)4117177646120107755Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse

Markers in Region
C87100  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381691,513,082 - 91,513,311UniSTSGRCm38
GRCm384118,432,904 - 118,433,121UniSTSGRCm38
MGSCv374118,105,509 - 118,105,726UniSTSGRCm37
MGSCv371691,513,327 - 91,513,556UniSTSGRCm37
Celera1692,589,651 - 92,589,880UniSTS
Celera4117,158,442 - 117,158,659UniSTS
Cytogenetic Map16C3.3UniSTS
Cytogenetic Map4D2.1UniSTS
Whitehead/MRC_RH16958.5UniSTS
BB151133  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384118,432,433 - 118,432,524UniSTSGRCm38
MGSCv374118,105,038 - 118,105,129UniSTSGRCm37
Celera4117,157,971 - 117,158,062UniSTS
Cytogenetic Map4D2.1UniSTS
Whitehead/MRC_RH41559.74UniSTS
RH125688  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384118,432,356 - 118,432,604UniSTSGRCm38
MGSCv374118,104,961 - 118,105,209UniSTSGRCm37
Celera4117,157,894 - 117,158,142UniSTS
Cytogenetic Map4D2.1UniSTS
Whitehead/MRC_RH41560.24UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001039175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001039176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF104033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF170907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF322919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL627212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM445297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY141978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY689799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY773043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ094566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN455861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX199666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000006557   ⟹   ENSMUSP00000006557
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,285,290 - 118,290,150 (+)Ensembl
GRCm38.p6 Ensembl4118,428,093 - 118,432,953 (+)Ensembl
RefSeq Acc Id: ENSMUST00000067896   ⟹   ENSMUSP00000064816
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,286,898 - 118,289,469 (+)Ensembl
GRCm38.p6 Ensembl4118,429,701 - 118,432,272 (+)Ensembl
RefSeq Acc Id: ENSMUST00000102673   ⟹   ENSMUSP00000099734
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,285,322 - 118,289,810 (+)Ensembl
GRCm38.p6 Ensembl4118,428,125 - 118,432,613 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129419
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,285,371 - 118,289,146 (+)Ensembl
GRCm38.p6 Ensembl4118,428,174 - 118,431,949 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135162
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,285,327 - 118,286,027 (+)Ensembl
GRCm38.p6 Ensembl4118,428,130 - 118,428,830 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143140
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,285,405 - 118,288,271 (+)Ensembl
GRCm38.p6 Ensembl4118,428,208 - 118,431,074 (+)Ensembl
RefSeq Acc Id: ENSMUST00000167636   ⟹   ENSMUSP00000126685
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,285,316 - 118,289,810 (+)Ensembl
GRCm38.p6 Ensembl4118,428,119 - 118,432,613 (+)Ensembl
RefSeq Acc Id: NM_001039175   ⟹   NP_001034264
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,285,321 - 118,290,150 (+)NCBI
GRCm384118,428,093 - 118,432,953 (+)NCBI
MGSCv374118,100,698 - 118,105,521 (+)RGD
Celera4117,153,631 - 117,158,491 (+)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001039176   ⟹   NP_001034265
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,286,909 - 118,290,150 (+)NCBI
GRCm384118,429,701 - 118,432,953 (+)NCBI
MGSCv374118,100,698 - 118,105,521 (+)RGD
Celera4117,153,631 - 117,158,491 (+)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001424987   ⟹   NP_001411916
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,286,909 - 118,290,150 (+)NCBI
RefSeq Acc Id: NM_001424988   ⟹   NP_001411917
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,285,321 - 118,290,150 (+)NCBI
RefSeq Acc Id: NM_001424989   ⟹   NP_001411918
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,285,321 - 118,290,150 (+)NCBI
RefSeq Acc Id: NM_019422   ⟹   NP_062295
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,285,321 - 118,290,150 (+)NCBI
GRCm384118,428,093 - 118,432,953 (+)NCBI
MGSCv374118,100,698 - 118,105,521 (+)RGD
Celera4117,153,631 - 117,158,491 (+)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_062295   ⟸   NM_019422
- Peptide Label: isoform 1
- UniProtKB: Q9D1B2 (UniProtKB/Swiss-Prot),   Q9JLJ5 (UniProtKB/Swiss-Prot),   Q548M4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001034264   ⟸   NM_001039175
- Peptide Label: isoform 2
- UniProtKB: Q4V9V3 (UniProtKB/TrEMBL),   Q9WU14 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001034265   ⟸   NM_001039176
- Peptide Label: isoform 1
- UniProtKB: Q9D1B2 (UniProtKB/Swiss-Prot),   Q9JLJ5 (UniProtKB/Swiss-Prot),   Q548M4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000006557   ⟸   ENSMUST00000006557
RefSeq Acc Id: ENSMUSP00000064816   ⟸   ENSMUST00000067896
RefSeq Acc Id: ENSMUSP00000126685   ⟸   ENSMUST00000167636
RefSeq Acc Id: ENSMUSP00000099734   ⟸   ENSMUST00000102673
RefSeq Acc Id: NP_001411917   ⟸   NM_001424988
- Peptide Label: isoform 1
- UniProtKB: Q9JLJ5 (UniProtKB/Swiss-Prot),   Q9D1B2 (UniProtKB/Swiss-Prot),   Q548M4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001411918   ⟸   NM_001424989
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001411916   ⟸   NM_001424987
- Peptide Label: isoform 2
- UniProtKB: Q4V9V3 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JLJ5-F1-model_v2 AlphaFold Q9JLJ5 1-279 view protein structure

Promoters
RGD ID:6835204
Promoter ID:MM_KWN:39295
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001039175,   OTTMUST00000019924,   OTTMUST00000019978,   OTTMUST00000019979,   OTTMUST00000019980,   UC008UJY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364118,100,311 - 118,101,132 (+)MPROMDB
RGD ID:6835203
Promoter ID:MM_KWN:39296
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001039176
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364118,101,341 - 118,102,612 (+)MPROMDB
RGD ID:6884408
Promoter ID:EPDNEW_M5655
Type:initiation region
Name:Elovl1_1
Description:Mus musculus elongation of very long chain fatty acids (FEN1/Elo2,SUR4/Elo3, yeast)-like 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5656  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384118,428,124 - 118,428,184EPDNEW
RGD ID:6884410
Promoter ID:EPDNEW_M5656
Type:single initiation site
Name:Elovl1_2
Description:Mus musculus elongation of very long chain fatty acids (FEN1/Elo2,SUR4/Elo3, yeast)-like 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5655  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384118,429,483 - 118,429,543EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1858959 AgrOrtholog
Ensembl Genes ENSMUSG00000006390 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000006557 ENTREZGENE
  ENSMUST00000006557.13 UniProtKB/Swiss-Prot
  ENSMUST00000067896 ENTREZGENE
  ENSMUST00000067896.4 UniProtKB/Swiss-Prot
  ENSMUST00000102673 ENTREZGENE
  ENSMUST00000102673.11 UniProtKB/TrEMBL
  ENSMUST00000167636.8 UniProtKB/Swiss-Prot
InterPro ELO_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ELO_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ELOVL1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:54325 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1858959 ENTREZGENE
NCBI Gene 54325 ENTREZGENE
PANTHER ELONGATION OF VERY LONG CHAIN FATTY ACIDS PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11157 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ELO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Elovl1 PhenoGen
PROSITE ELO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt ELOV1_MOUSE UniProtKB/Swiss-Prot
  Q4V9V3 ENTREZGENE, UniProtKB/TrEMBL
  Q548M4 ENTREZGENE, UniProtKB/TrEMBL
  Q9D1B2 ENTREZGENE
  Q9JLJ5 ENTREZGENE
  Q9WU14 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q9D1B2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-04 Elovl1  ELOVL fatty acid elongase 1  Elovl1  elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1  Symbol and/or name change 5135510 APPROVED