Tes3-ps (testis derived transcript 3, pseudogene) - Rat Genome Database

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Gene: Tes3-ps (testis derived transcript 3, pseudogene) Mus musculus
Analyze
No known orthologs.
Symbol: Tes3-ps
Name: testis derived transcript 3, pseudogene
RGD ID: 1615925
MGI Page MGI
Description: Predicted to enable cullin family protein binding activity. Predicted to be involved in positive regulation of protein neddylation and regulation of protein ubiquitination. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of ubiquitin ligase complex. Orthologous to human DCUN1D1 (defective in cullin neddylation 1 domain containing 1); INTERACTS WITH dioxygen; phenobarbital; sodium arsenate.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: Dcun1d1; Dcun1l1; Tes3
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Dcun1d1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391349,647,077 - 49,649,865 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1349,646,794 - 49,650,065 (+)EnsemblGRCm39 Ensembl
GRCm381349,493,601 - 49,496,389 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1349,493,318 - 49,496,589 (+)EnsemblGRCm38mm10GRCm38
MGSCv371349,589,021 - 49,591,758 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361349,503,462 - 49,508,526 (+)NCBIMGSCv36mm8
Celera1350,583,833 - 50,586,571 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1325.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10777668   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Tes3-ps
103 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
1558898Hpi1_mhapatic PMN infiltration 1 (mouse)Not determined13441402553101640Mouse
1301880Hypt_mhypertension (mouse)Not determined131815679252156924Mouse
13463469Gssq1_mglomerulosclerosis severity QTL 1 (mouse)131906090853061050Mouse
12880423V25Dq7_mvitamin D inactive form serum level QTL 7 (mouse)131958398353583983Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132047761259821605Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
1357591Tesq1_mtestis weight QTL 1 (mouse)Not determined132061551255720517Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
10045618Heal17_mwound healing/regeneration 17 (mouse)Not determined132074693954747056Mouse
4142489Ath25_matherosclerosis 25 (mouse)Not determined2583652959836529Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132791846961918560Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132821044262210544Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132821737962217515Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132821737962217515Mouse
10755533Chol18_mcholesterol 18 (mouse)133096946764969467Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
12738427Lfibq24_mliver fibrosis QTL 24 (mouse)134425810752758667Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
26884396Humsd4_mhumerus midshaft diameter 4, 10 week (mouse)134785347673148119Mouse

Markers in Region
C85469  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381349,494,855 - 49,494,937UniSTSGRCm38
GRCm38335,895,112 - 35,895,194UniSTSGRCm38
MGSCv371349,590,224 - 49,590,306UniSTSGRCm37
MGSCv37335,794,034 - 35,794,116UniSTSGRCm37
Celera1350,585,036 - 50,585,118UniSTS
Celera1350,587,052 - 50,587,134UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic Map13B1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000222404   ⟹   ENSMUSP00000152773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1349,646,794 - 49,650,065 (+)Ensembl
GRCm38.p6 Ensembl1349,493,318 - 49,496,589 (+)Ensembl
Protein Sequences
GenBank Protein BAC26390 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000152773.2
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000152773   ⟸   ENSMUST00000222404
Protein Domains
DCUN1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1Y7VP24-F1-model_v2 AlphaFold A0A1Y7VP24 1-259 view protein structure

Promoters
RGD ID:6824438
Promoter ID:MM_KWN:14043
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B6
Transcripts:AK029314_TES3-PS
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361349,587,791 - 49,588,291 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3582925 AgrOrtholog
Ensembl Genes ENSMUSG00000113255 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000222404.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.238.200 UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro DCN-prot UniProtKB/TrEMBL
  DCN1-like_PONY UniProtKB/TrEMBL
  PONY_dom UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/TrEMBL
MGD MGI:3582925 ENTREZGENE
NCBI Gene 54339 ENTREZGENE
PANTHER DCN1-LIKE PROTEIN 1 UniProtKB/TrEMBL
  PTHR12281 UniProtKB/TrEMBL
Pfam Cullin_binding UniProtKB/TrEMBL
  UBA_4 UniProtKB/TrEMBL
PhenoGen Tes3-ps PhenoGen
PROSITE DCUN1 UniProtKB/TrEMBL
Superfamily-SCOP SSF46934 UniProtKB/TrEMBL
UniProt A0A1Y7VP24_MOUSE UniProtKB/TrEMBL