E030018B13Rik (RIKEN cDNA E030018B13 gene) - Rat Genome Database

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Gene: E030018B13Rik (RIKEN cDNA E030018B13 gene) Mus musculus
Analyze
Symbol: E030018B13Rik
Name: RIKEN cDNA E030018B13 gene
RGD ID: 1615509
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Gm1697; uncharacterized protein LOC381994
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39763,566,605 - 63,570,287 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl763,566,605 - 63,570,287 (+)EnsemblGRCm39 Ensembl
GRCm38763,916,857 - 63,920,539 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl763,916,857 - 63,920,539 (+)EnsemblGRCm38mm10GRCm38
MGSCv37771,061,743 - 71,065,425 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36763,795,807 - 63,799,489 (+)NCBIMGSCv36mm8
Celera761,354,344 - 61,358,026 (+)NCBICelera
Cytogenetic Map7CNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in E030018B13Rik
125 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:157
Count of miRNA genes:137
Interacting mature miRNAs:148
Transcripts:ENSMUST00000177638
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74524974879249748Mouse
25314302Vmm2_mvariable multisystem mineralization 2, heart (mouse)74714974874149748Mouse
12738423Lfibq6_mliver fibrosis QTL 6 (mouse)74769437866704862Mouse
1302141Fcsa6_mfemoral cross-sectional area 6 (mouse)Not determined74838446182384607Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74915922783235415Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74919327883193390Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75112495485125093Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75112495485125093Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75214974886149748Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75588950887142720Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
13432171Rosd1_mrotarod saline difference 1 (mouse)75919437869004862Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
13506761Tbthq1_mtrabecular bone thickness QTL 1 (mouse)76234974867749748Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000177638   ⟹   ENSMUSP00000136435
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl763,566,605 - 63,570,287 (+)Ensembl
GRCm38.p6 Ensembl763,916,857 - 63,920,539 (+)Ensembl
RefSeq Acc Id: NM_001256311   ⟹   NP_001243240
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39763,566,605 - 63,570,287 (+)NCBI
GRCm38763,916,857 - 63,920,539 (+)NCBI
Celera761,354,344 - 61,358,026 (+)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001243240 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000136435
  ENSMUSP00000136435.2
Reference Protein Sequences
RefSeq Acc Id: NP_001243240   ⟸   NM_001256311
- UniProtKB: J3QMS9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000136435   ⟸   ENSMUST00000177638

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-J3QMS9-F1-model_v2 AlphaFold J3QMS9 1-113 view protein structure

Promoters
RGD ID:8664329
Promoter ID:EPDNEW_M10196
Type:multiple initiation site
Name:E030018B13Rik_1
Description:Mus musculus RIKEN cDNA E030018B13 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38763,916,892 - 63,916,952EPDNEW
RGD ID:6840969
Promoter ID:MM_KWN:50897
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:AK086985_E030018B13RIK
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36771,060,851 - 71,062,042 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000095061 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000177638 ENTREZGENE
  ENSMUST00000177638.2 UniProtKB/TrEMBL
KEGG Report mmu:381994 UniProtKB/TrEMBL
MGD MGI:2686543 ENTREZGENE
NCBI Gene 381994 ENTREZGENE
PhenoGen E030018B13Rik PhenoGen
UniProt J3QMS9 ENTREZGENE, UniProtKB/TrEMBL