Vmn1r55 (vomeronasal 1 receptor 55) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Vmn1r55 (vomeronasal 1 receptor 55) Mus musculus
Analyze
Symbol: Vmn1r55
Name: vomeronasal 1 receptor 55
RGD ID: 1615503
MGI Page MGI
Description: INTERACTS WITH lead diacetate
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Gm1422; Gm403; V1r; V1rd5; vomernasal 1 receptor Vmn1r55; vomeronasal 1 receptor, D5
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3975,149,489 - 5,150,421 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl75,132,290 - 5,152,669 (-)EnsemblGRCm39 Ensembl
GRCm3875,146,490 - 5,147,422 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl75,129,291 - 5,149,670 (-)EnsemblGRCm38mm10GRCm38
MGSCv3775,098,092 - 5,099,024 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3674,749,577 - 4,752,630 (-)NCBIMGSCv36mm8
Celera74,888,644 - 4,889,576 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.98NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11163270   PMID:11802169   PMID:19952141   PMID:20003482   PMID:21873635  


Genomics

Variants

.
Variants in Vmn1r55
39 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:259
Count of miRNA genes:225
Interacting mature miRNAs:232
Transcripts:ENSMUST00000098844
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25394570Skmw58_mskeletal muscle weight 58, TA (mouse)735524286281481Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001166706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC162893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000098844   ⟹   ENSMUSP00000096443
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,149,489 - 5,150,421 (-)Ensembl
GRCm38.p6 Ensembl75,146,490 - 5,147,422 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235536
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,132,290 - 5,152,666 (-)Ensembl
GRCm38.p6 Ensembl75,129,291 - 5,149,667 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235676
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,132,290 - 5,152,669 (-)Ensembl
GRCm38.p6 Ensembl75,129,291 - 5,149,670 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,132,290 - 5,152,669 (-)Ensembl
GRCm38.p6 Ensembl75,129,291 - 5,149,670 (-)Ensembl
RefSeq Acc Id: ENSMUST00000236042
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,132,290 - 5,152,669 (-)Ensembl
GRCm38.p6 Ensembl75,129,291 - 5,149,670 (-)Ensembl
RefSeq Acc Id: ENSMUST00000236378   ⟹   ENSMUSP00000157984
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,132,290 - 5,152,669 (-)Ensembl
GRCm38.p6 Ensembl75,129,291 - 5,149,670 (-)Ensembl
RefSeq Acc Id: NM_001166706   ⟹   NP_001160178
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,149,489 - 5,150,421 (-)NCBI
GRCm3875,146,490 - 5,147,422 (-)ENTREZGENE
MGSCv3775,098,092 - 5,099,024 (-)RGD
Celera74,888,644 - 4,889,576 (-)RGD
cM Map7 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001160178 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000096443
  ENSMUSP00000096443.4
  ENSMUSP00000157984.2
Reference Protein Sequences
RefSeq Acc Id: NP_001160178   ⟸   NM_001166706
- UniProtKB: E9Q8I6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000096443   ⟸   ENSMUST00000098844
RefSeq Acc Id: ENSMUSP00000157984   ⟸   ENSMUST00000236378
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9Q8I6-F1-model_v2 AlphaFold E9Q8I6 1-310 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000118215 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000098844 ENTREZGENE
  ENSMUST00000098844.5 UniProtKB/TrEMBL
  ENSMUST00000236378.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
KEGG Report mmu:384522 UniProtKB/TrEMBL
MGD MGI:3033474 ENTREZGENE
NCBI Gene 384522 ENTREZGENE
PANTHER PTHR24062 UniProtKB/TrEMBL
  VOMERONASAL TYPE-1 RECEPTOR UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PhenoGen Vmn1r55 PhenoGen
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt E9Q8I6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r55  vomeronasal 1 receptor 55  V1rd5  vomeronasal 1 receptor, D5  Symbol and/or name change 5135510 APPROVED