1110032F04Rik (RIKEN cDNA 1110032F04 gene) - Rat Genome Database

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Gene: 1110032F04Rik (RIKEN cDNA 1110032F04 gene) Mus musculus
Analyze
Symbol: 1110032F04Rik
Name: RIKEN cDNA 1110032F04 gene
RGD ID: 1615100
MGI Page MGI
Description: Predicted to be located in membrane. Orthologous to human C3orf80 (chromosome 3 open reading frame 80).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI115547; hypothetical protein LOC68725; uncharacterized membrane protein C3orf80 homolog
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39368,776,684 - 68,779,496 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl368,776,919 - 68,779,496 (+)EnsemblGRCm39 Ensembl
GRCm38368,869,586 - 68,872,163 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl368,869,586 - 68,872,163 (+)EnsemblGRCm38mm10GRCm38
MGSCv37368,673,508 - 68,676,085 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36368,956,550 - 68,960,092 (+)NCBIMGSCv36mm8
Celera368,982,228 - 68,984,806 (+)NCBICelera
Cytogenetic Map3E1NCBI
cM Map332.06NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
1110032F04Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39368,776,684 - 68,779,496 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl368,776,919 - 68,779,496 (+)EnsemblGRCm39 Ensembl
GRCm38368,869,586 - 68,872,163 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl368,869,586 - 68,872,163 (+)EnsemblGRCm38mm10GRCm38
MGSCv37368,673,508 - 68,676,085 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36368,956,550 - 68,960,092 (+)NCBIMGSCv36mm8
Celera368,982,228 - 68,984,806 (+)NCBICelera
Cytogenetic Map3E1NCBI
cM Map332.06NCBI
C3orf80
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383160,225,422 - 160,228,213 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3160,225,422 - 160,228,213 (+)EnsemblGRCh38hg38GRCh38
GRCh373159,943,209 - 159,946,000 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363161,425,777 - 161,428,694 (+)NCBINCBI36Build 36hg18NCBI36
Celera3158,364,792 - 158,367,369 (+)NCBICelera
Cytogenetic Map3q25.33NCBI
HuRef3157,342,144 - 157,344,648 (+)NCBIHuRef
CHM1_13159,906,643 - 159,909,220 (+)NCBICHM1_1
T2T-CHM13v2.03163,000,019 - 163,002,810 (+)NCBIT2T-CHM13v2.0
C2h3orf80
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82155,435,287 - 155,438,099 (+)NCBIGRCr8
mRatBN7.22153,125,312 - 153,128,124 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2153,125,676 - 153,126,419 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2160,254,955 - 160,257,770 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02158,305,482 - 158,308,297 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02152,938,248 - 152,941,063 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02165,486,809 - 165,489,356 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2165,486,910 - 165,487,653 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02184,847,604 - 184,850,129 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42158,872,555 - 158,873,421 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2147,476,281 - 147,478,828 (+)NCBICelera
Cytogenetic Map2q32NCBI
C2H3orf80
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22158,158,011 - 158,169,366 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13158,162,732 - 158,174,099 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03157,247,154 - 157,250,297 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13165,295,538 - 165,296,975 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3165,296,161 - 165,296,902 (+)Ensemblpanpan1.1panPan2
C34H3orf80
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3430,350,299 - 30,351,325 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03426,364,398 - 26,365,419 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3426,364,398 - 26,365,093 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13426,294,357 - 26,295,375 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03426,255,193 - 26,256,166 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03426,495,214 - 26,496,194 (+)NCBIUU_Cfam_GSD_1.0
CUNH3orf80
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560292,173,596 - 92,176,652 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936708211,768 - 212,517 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936708211,593 - 213,700 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C13H3orf80
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1399,925,375 - 99,928,684 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11399,924,886 - 99,928,687 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CUNH3orf80
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11530,606,300 - 30,609,710 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1530,608,491 - 30,609,234 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660413,134,107 - 3,137,115 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH3orf80
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473037,980,908 - 37,981,630 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473037,980,820 - 37,983,370 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in 1110032F04Rik
101 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:511
Count of miRNA genes:365
Interacting mature miRNAs:419
Transcripts:ENSMUST00000054551
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
18337272Bmd46_mbone mineral density 46, males (mouse)33540742169407421Mouse
14746977Manh53_mmandible shape 53 (mouse)33592528069925280Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
11041901Lmr11b_mleishmaniasis resistance 11b (mouse)33970410273704231Mouse
11039513Ltpr3a_mLeishmania tropica response 3a (mouse)33970410273704231Mouse
1301585Cd4ts1_mCD4 T cell subset 1 (mouse)Not determined33970410273704231Mouse
10755516Amzn1_manatomical modifier of Zfp423 1 (mouse)33970410273704231Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
4141079Ath23_matherosclerosis 23 (mouse)Not determined4935758183357581Mouse
1300895Hdl5_mHDL level 5 (mouse)Not determined34949500583495118Mouse
1301824Susp_msuppressor of superoxide production (mouse)Not determined34949500583495118Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
1357585Manln3_mmandible length 3 (mouse)Not determined35262550986625745Mouse
1301917Tshp4_mtooth shape 4 (mouse)Not determined35262550986625745Mouse
1300593Skull4_mskull morphology 4 (mouse)Not determined35262550986625745Mouse
13464139Nhdlq17_mnon-HDL QTL 17 (mouse)35292318386923183Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse

Markers in Region
RH135888  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38368,871,187 - 68,871,339UniSTSGRCm38
MGSCv37368,675,109 - 68,675,261UniSTSGRCm37
Celera368,983,830 - 68,983,982UniSTS
Cytogenetic Map3E1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000054551   ⟹   ENSMUSP00000056782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl368,776,919 - 68,779,496 (+)Ensembl
GRCm38.p6 Ensembl368,869,586 - 68,872,163 (+)Ensembl
RefSeq Acc Id: NM_001167996   ⟹   NP_001161468
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39368,776,684 - 68,779,496 (+)NCBI
GRCm38368,869,586 - 68,872,163 (+)ENTREZGENE
MGSCv37368,673,508 - 68,676,085 (+)RGD
Celera368,982,228 - 68,984,806 (+)RGD
cM Map3 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001161468 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAC38434 (Get FASTA)   NCBI Sequence Viewer  
  E9Q0B3 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000056782
  ENSMUSP00000056782.3
Reference Protein Sequences
RefSeq Acc Id: NP_001161468   ⟸   NM_001167996
- Peptide Label: precursor
- UniProtKB: Q8C4H3 (UniProtKB/Swiss-Prot),   E9Q0B3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000056782   ⟸   ENSMUST00000054551

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9Q0B3-F1-model_v2 AlphaFold E9Q0B3 1-247 view protein structure

Promoters
RGD ID:6833157
Promoter ID:MM_KWN:34557
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Spleen
Transcripts:AK082199_1110032F04RIK,   NM_001167996
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36368,673,509 - 68,674,009 (+)MPROMDB
RGD ID:6880854
Promoter ID:EPDNEW_M3878
Type:initiation region
Name:1110032F04Rik_1
Description:Mus musculus RIKEN cDNA 1110032F04 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38368,869,654 - 68,869,714EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915975 AgrOrtholog
Ensembl Genes ENSMUSG00000046999 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000054551 ENTREZGENE
  ENSMUST00000054551.3 UniProtKB/Swiss-Prot
InterPro DUF4719 UniProtKB/Swiss-Prot
KEGG Report mmu:68725 UniProtKB/Swiss-Prot
MGD MGI:1915975 ENTREZGENE
NCBI Gene 68725 ENTREZGENE
PANTHER HYPOTHETICAL PROTEIN LOC100362176 UniProtKB/Swiss-Prot
  PTHR38505 UniProtKB/Swiss-Prot
Pfam DUF4719 UniProtKB/Swiss-Prot
PhenoGen 1110032F04Rik PhenoGen
UniProt CC080_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8C4H3 ENTREZGENE
UniProt Secondary Q8C4H3 UniProtKB/Swiss-Prot