Gm1123 (predicted gene 1123) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gm1123 (predicted gene 1123) Mus musculus
Analyze
No known orthologs.
Symbol: Gm1123
Name: predicted gene 1123
RGD ID: 1614766
MGI Page MGI
Description: Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in homotypic cell-cell adhesion. Predicted to be active in basolateral plasma membrane; bicellular tight junction; and intercalated disc. Is expressed in face.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AV052824; CAR-like soluble protein; CLSP; coxsackie adenovirus receptor-like; MGC141178
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39998,889,018 - 98,917,743 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl998,888,843 - 98,917,768 (-)EnsemblGRCm39 Ensembl
GRCm38999,006,965 - 99,035,690 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl999,006,790 - 99,035,715 (-)EnsemblGRCm38mm10GRCm38
MGSCv37998,907,384 - 98,936,109 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36998,816,134 - 98,837,522 (-)NCBIMGSCv36mm8
MGSCv36999,526,604 - 99,558,847 (-)NCBIMGSCv36mm8
Celera998,544,751 - 98,573,376 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map951.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:16542650   PMID:16602821   PMID:17538635  
PMID:21677750   PMID:21873635   PMID:23519124   PMID:24565867  


Genomics

Variants

.
Variants in Gm1123
1107 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:168
Count of miRNA genes:161
Interacting mature miRNAs:166
Transcripts:ENSMUST00000076730
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966089077100089175Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967006220101006220Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968779563102779705Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968779563102779705Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969121898103121973Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969428566103428698Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972859058106859205Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972859058106859205Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974250230108250378Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976024387101406120Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981680321115680445Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982792386116792481Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984406017118406120Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985779563108518385Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986107600120107729Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986625682120625682Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989162124123162124Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989859058118767089Mouse
12910770Splic1_mspleen iron content 1 (mouse)991291078124359700Mouse
12910772Lvic6_mliver iron content 6 (mouse)991291078124359700Mouse
12910773Splic3_mspleen iron content 3 (mouse)991291078124359700Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991518283124359700Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991518283124359700Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991518283124359700Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991518283124359700Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991518283124359700Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991518283124359700Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991560372124359700Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991560372124359700Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
1301484Bwq6_mbody weight (mouse)Not determined993591658124359700Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993591658124359700Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994863354112701997Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996746658124359700Mouse

Markers in Region
D9Dcr31  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38999,022,716 - 99,022,810UniSTSGRCm38
MGSCv37998,923,135 - 98,923,229UniSTSGRCm37
Celera998,560,406 - 98,560,500UniSTS
Cytogenetic Map9E3.3UniSTS
cM Map9 UniSTS
UniSTS:236232  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38999,006,855 - 99,007,065UniSTSGRCm38
MGSCv37998,907,274 - 98,907,484UniSTSGRCm37
Celera998,544,641 - 98,544,851UniSTS
Cytogenetic Map9E3.3UniSTS
D9Mit199  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38999,020,903 - 99,021,041UniSTSGRCm38
MGSCv37998,921,322 - 98,921,460UniSTSGRCm37
Celera998,558,592 - 98,558,730UniSTS
Cytogenetic Map9E3.3UniSTS
cM Map953.0UniSTS
Whitehead Genetic949.2UniSTS
Whitehead/MRC_RH81352.11UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000076730   ⟹   ENSMUSP00000076020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl998,888,843 - 98,917,768 (-)Ensembl
GRCm38.p6 Ensembl999,006,790 - 99,035,715 (-)Ensembl
RefSeq Acc Id: NM_001080776   ⟹   NP_001074245
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39998,889,018 - 98,917,743 (-)NCBI
GRCm38999,006,965 - 99,035,690 (-)ENTREZGENE
MGSCv37998,907,384 - 98,936,109 (-)RGD
Celera998,544,751 - 98,573,376 (-)RGD
cM Map9 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001074245 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI14987 (Get FASTA)   NCBI Sequence Viewer  
  AAI15957 (Get FASTA)   NCBI Sequence Viewer  
  BAF46210 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000076020
  ENSMUSP00000076020.7
Reference Protein Sequences
RefSeq Acc Id: NP_001074245   ⟸   NM_001080776
- Peptide Label: precursor
- UniProtKB: Q1RME4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000076020   ⟸   ENSMUST00000076730
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q1RME4-F1-model_v2 AlphaFold Q1RME4 1-390 view protein structure

Promoters
RGD ID:6844566
Promoter ID:MM_KWN:58479
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung
Transcripts:ENSMUST00000076730
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36998,935,656 - 98,936,987 (-)MPROMDB
RGD ID:8670546
Promoter ID:EPDNEW_M13304
Type:initiation region
Name:Gm1123_1
Description:Mus musculus predicted gene 1123 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38999,035,702 - 99,035,762EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2685969 AgrOrtholog
Ensembl Genes ENSMUSG00000044860 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000076730 ENTREZGENE
  ENSMUST00000076730.8 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
KEGG Report mmu:382097 UniProtKB/TrEMBL
MGD MGI:2685969 ENTREZGENE
NCBI Gene 382097 ENTREZGENE
PANTHER CAR-LIKE SOLUBLE PROTEIN UniProtKB/TrEMBL
  COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR-RELATED UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen Gm1123 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt Q1RME4 ENTREZGENE, UniProtKB/TrEMBL