Gm6117 (predicted gene 6117) - Rat Genome Database

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Gene: Gm6117 (predicted gene 6117) Mus musculus
Analyze
Symbol: Gm6117
Name: predicted gene 6117
RGD ID: 1614657
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: EG619959; predicted gene, EG619959
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39631,551,902 - 31,553,540 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl631,551,902 - 31,553,658 (+)EnsemblGRCm39 Ensembl
GRCm38631,574,967 - 31,576,605 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl631,574,967 - 31,576,723 (+)EnsemblGRCm38mm10GRCm38
MGSCv37631,524,967 - 31,526,605 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36631,505,130 - 31,506,768 (+)NCBIMGSCv36mm8
Celera631,561,577 - 31,562,737 (+)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in Gm6117
46 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:86
Count of miRNA genes:83
Interacting mature miRNAs:85
Transcripts:ENSMUST00000150540
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797146118069Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61961634653616346Mouse
1302024Skull7_mskull morphology 7 (mouse)Not determined6132144495Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707443297168Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
5491191Mobq2_mmultigenic obesity QTL 2 (mouse)Not determined6132144495Mouse
15039372Nmrs22_mNAFLD-associated magnetic resonance shift 22 (mouse)6147633435476334Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122146751333Mouse
1301131Chol2_mcholesterol 2 (mouse)Not determined6132144495Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1771159851711719Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61961634653616346Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61771159851711719Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62004983054049830Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122146751333Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61961634653616346Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920638249325Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61771159851711719Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2829099362291115Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000150540
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl631,551,902 - 31,553,658 (+)Ensembl
GRCm38.p6 Ensembl631,574,967 - 31,576,723 (+)Ensembl
RefSeq Acc Id: NR_153845
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39631,551,902 - 31,553,540 (+)NCBI
GRCm38631,574,967 - 31,576,605 (+)NCBI
Sequence:
Promoters
RGD ID:15093048
Promoter ID:EPDNEWNC_M951
Type:multiple initiation site
Name:Gm6117_1
Description:predicted gene 6117 [Source:MGI Symbol;Acc:MGI:3647032]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38631,574,986 - 31,575,046EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086732 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000150540 ENTREZGENE
MGD MGI:3647032 ENTREZGENE
NCBI Gene Gm6117 ENTREZGENE
PhenoGen Gm6117 PhenoGen
RNAcentral URS0000CCDF9B RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-12 Gm6117  predicted gene 6117  EG619959  predicted gene, EG619959  Symbol and/or name change 5135510 APPROVED