Snord32a (small nucleolar RNA, C/D box 32A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Snord32a (small nucleolar RNA, C/D box 32A) Mus musculus
Analyze
Symbol: Snord32a
Name: small nucleolar RNA, C/D box 32A
RGD ID: 1614400
MGI Page MGI
Description: Acts upstream of or within glucose metabolic process; insulin secretion; and reactive oxygen species metabolic process. Orthologous to human SNORD32A (small nucleolar RNA, C/D box 32A).
Type: snorna
RefSeq Status: VALIDATED
Previously known as: Rnu; Rnu32; Rnu32a; U32; U32A
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,776,807 - 44,776,887 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,776,806 - 44,776,888 (-)EnsemblGRCm39 Ensembl
GRCm38745,127,383 - 45,127,463 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,127,382 - 45,127,464 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,382,753 - 52,382,833 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,995,425 - 44,995,505 (-)NCBIMGSCv36mm8
Celera740,580,475 - 40,580,555 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1694221   PMID:6290993   PMID:10580157   PMID:21723502   PMID:27820699  


Genomics

Comparative Map Data
Snord32a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,776,807 - 44,776,887 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,776,806 - 44,776,888 (-)EnsemblGRCm39 Ensembl
GRCm38745,127,383 - 45,127,463 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,127,382 - 45,127,464 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,382,753 - 52,382,833 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,995,425 - 44,995,505 (-)NCBIMGSCv36mm8
Celera740,580,475 - 40,580,555 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.14NCBI
SNORD32A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,489,966 - 49,490,047 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,489,965 - 49,490,048 (+)EnsemblGRCh38hg38GRCh38
GRCh371949,993,223 - 49,993,304 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,685,035 - 54,685,116 (+)NCBINCBI36Build 36hg18NCBI36
Celera1946,862,546 - 46,862,627 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,370,762 - 46,370,843 (+)NCBIHuRef
CHM1_11949,994,497 - 49,994,578 (+)NCBICHM1_1
T2T-CHM13v2.01952,489,932 - 52,490,013 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in Snord32a
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:152
Count of miRNA genes:142
Interacting mature miRNAs:150
Transcripts:ENSMUST00000083285
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3349772758148965Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3349772758148965Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3349772758148965Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3349772758148965Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73349772758148965Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73349772758148965Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083285
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,776,806 - 44,776,888 (-)Ensembl
GRCm38.p6 Ensembl745,127,382 - 45,127,464 (-)Ensembl
RefSeq Acc Id: NR_000002
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,776,807 - 44,776,887 (-)NCBI
GRCm38745,127,383 - 45,127,463 (-)ENTREZGENE
MGSCv37752,382,753 - 52,382,833 (-)RGD
Celera740,580,475 - 40,580,555 (-)RGD
cM Map7 ENTREZGENE
Sequence:
Promoters
RGD ID:6842075
Promoter ID:MM_KWN:50348
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NR_000002,   NR_000003,   NR_001277,   NR_002455,   OTTMUST00000039833,   OTTMUST00000039838
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,381,826 - 52,383,232 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1351324 AgrOrtholog
Ensembl Genes ENSMUSG00000065219 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083285 ENTREZGENE
MGD MGI:1351324 ENTREZGENE
NCBI Gene 27209 ENTREZGENE
PhenoGen Snord32a PhenoGen
RNAcentral URS0000839FAE RNACentral