4930578N18Rik (RIKEN cDNA 4930578N18 gene) - Rat Genome Database

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Gene: 4930578N18Rik (RIKEN cDNA 4930578N18 gene) Mus musculus
Analyze
Symbol: 4930578N18Rik
Name: RIKEN cDNA 4930578N18 gene
RGD ID: 1612561
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Previously known as: hypothetical protein LOC78215
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391675,919,501 - 75,952,974 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1675,919,501 - 75,952,974 (+)EnsemblGRCm39 Ensembl
GRCm381676,122,613 - 76,156,086 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1676,122,613 - 76,156,086 (+)EnsemblGRCm38mm10GRCm38
MGSCv371676,122,858 - 76,156,331 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361676,122,858 - 76,156,331 (+)NCBIMGSCv36mm8
Celera1676,341,258 - 76,365,809 (+)NCBICelera
Cytogenetic Map16C3.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12040188   PMID:12466851   PMID:16141072   PMID:16141073   PMID:18799693  


Genomics

Variants

.
Variants in 4930578N18Rik
1339 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
26884416Bzwq5_mbi-zygomatic width QTL 5, 5 week (mouse)163732036284696888Mouse
11522747Eae41_mexperimental allergic encephalomyelitis susceptibility 41 (mouse)164039913478015472Mouse
1357778Diobq_mdiet-induced obesity QTL (mouse)Not determined164219781782331174Mouse
4141212Imraq3_mimmune response to AAV2 QTL 3 (mouse)Not determined164438335078383506Mouse
1301719Remslp3_mrapid eye movement sleep 3 (mouse)Not determined164438335078383506Mouse
14928310Manh80_mmandible shape 80 (mouse)164821984182219841Mouse
1301394Eae11_msusceptibility to experimental allergic encephalomyelitis 11 (mouse)Not determined165356189187562035Mouse
1301364Lith14_mlithogenic gene 14 (mouse)Not determined165566184689661961Mouse
1301125Sluc27_msusceptibility to lung cancer 27 (mouse)Not determined166160864495608764Mouse
4141113Tgq28_mtriglyceride QTL 28 (mouse)Not determined6298664696986646Mouse
1300928Etia_methanol induced activation (mouse)Not determined166331390797314016Mouse
1558740Bpq9_mblood pressure QTL 9 (mouse)Not determined166332733697327472Mouse
1302194Pgia10_mproteoglycan induced arthritis 10 (mouse)Not determined166860072298008968Mouse
1301032Tauph_mtau phosphorylation (mouse)Not determined166907613298008968Mouse
11049573Lmr18b_mleishmaniasis resistance 18b (mouse)166912761198008968Mouse
11049574Lmr18a_mleishmaniasis resistance 18a (mouse)166912761198008968Mouse
4142262Lmr18_mleishmaniasis resistance 18 (mouse)Not determined166912761198008968Mouse
11522753Cocia19_mcocaine-induced activity, QTL 19 (mouse)166925448298008968Mouse
1301598Renf2_mrenal failure 2 (mouse)Not determined167038025298008968Mouse
10412076Pod_mplasticity of ocular dominance (mouse)Not determined167354484584350326Mouse
12880403Sefq1_mstress effect QTL 1 (mouse)167469664378896643Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000231285
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1675,919,543 - 75,946,712 (+)Ensembl
GRCm38.p6 Ensembl1676,122,655 - 76,149,824 (+)Ensembl
RefSeq Acc Id: ENSMUST00000232455
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1675,919,501 - 75,952,974 (+)Ensembl
GRCm38.p6 Ensembl1676,122,613 - 76,156,086 (+)Ensembl
RefSeq Acc Id: NR_040575
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391675,919,501 - 75,952,974 (+)NCBI
GRCm381676,122,613 - 76,156,086 (+)ENTREZGENE
Celera1676,341,258 - 76,365,809 (+)ENTREZGENE
cM Map16 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein EDK98275 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000116695 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000232455 ENTREZGENE
MGD MGI:1925465 ENTREZGENE
NCBI Gene 78215 ENTREZGENE
PhenoGen 4930578N18Rik PhenoGen
RNAcentral URS000075AC0E RNACentral