4933431K23Rik (RIKEN cDNA 4933431K23 gene) - Rat Genome Database

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Gene: 4933431K23Rik (RIKEN cDNA 4933431K23 gene) Mus musculus
Analyze
Symbol: 4933431K23Rik
Name: RIKEN cDNA 4933431K23 gene
RGD ID: 1612232
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC74475; LOC105243223; uncharacterized LOC105243223; uncharacterized protein LOC74475
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39878,350,795 - 78,413,208 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl878,337,489 - 78,496,311 (+)EnsemblGRCm39 Ensembl
GRCm38877,635,941 - 77,667,101 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl877,610,860 - 77,769,682 (+)EnsemblGRCm38mm10GRCm38
Celera882,005,780 - 82,050,376 (+)NCBICelera
Cytogenetic Map8C1NCBI
cM Map836.62NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:18799693   PMID:36739479  


Genomics

Variants

.
Variants in 4933431K23Rik
2282 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:196
Count of miRNA genes:172
Interacting mature miRNAs:178
Transcripts:ENSMUST00000133139, ENSMUST00000139140, ENSMUST00000153937
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84474791478748059Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84809006482090180Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84809006482090180Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84819016882190288Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84924559183245673Mouse
14746987Manh64_mmandible shape 64 (mouse)85050595884505958Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85050595884505958Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85233484386334843Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85474046188740637Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85515925889159407Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85629887290298872Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85913640493136404Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86151347995513605Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86872247983326976Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7158942790929226Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871829531105829637Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined872122809106123021Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873929123107929226Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined876402145110402251Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined876411976110412125Mouse

Markers in Region
AU050021  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38877,767,844 - 77,768,888UniSTSGRCm38
MGSCv37880,291,743 - 80,292,787UniSTSGRCm37
Celera882,050,462 - 82,051,506UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000133139
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl878,490,988 - 78,494,827 (+)Ensembl
GRCm38.p6 Ensembl877,764,359 - 77,768,198 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139140
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl878,337,489 - 78,413,201 (+)Ensembl
GRCm38.p6 Ensembl877,610,860 - 77,686,572 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153937
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl878,385,877 - 78,495,599 (+)Ensembl
GRCm38.p6 Ensembl877,659,248 - 77,768,970 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209273
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl878,450,213 - 78,496,311 (+)Ensembl
GRCm38.p6 Ensembl877,723,584 - 77,769,682 (+)Ensembl
RefSeq Acc Id: ENSMUST00000241650
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl878,450,282 - 78,494,842 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242021
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl878,450,307 - 78,495,611 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl878,450,349 - 78,494,842 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245517
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl878,450,289 - 78,494,842 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245654
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl878,450,289 - 78,494,842 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl878,450,289 - 78,494,842 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245883
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl878,450,285 - 78,494,842 (+)Ensembl
RefSeq Acc Id: ENSMUST00000246303
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl878,450,235 - 78,494,842 (+)Ensembl
RefSeq Acc Id: ENSMUST00000246398
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl878,450,349 - 78,494,842 (+)Ensembl
RefSeq Acc Id: NR_170976
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39878,350,795 - 78,413,208 (+)NCBI
Promoters
RGD ID:8667525
Promoter ID:EPDNEW_M11794
Type:initiation region
Name:AK135599_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38877,659,318 - 77,659,378EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086451 Ensembl
MGD MGI:1921725 ENTREZGENE
NCBI Gene 74475 ENTREZGENE
PhenoGen 4933431K23Rik PhenoGen
RNAcentral URS0002123150 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-11-05 4933431K23Rik  RIKEN cDNA 4933431K23 gene  LOC105243223  uncharacterized LOC105243223  Data merged from RGD:39129766 737654 PROVISIONAL