4933429O19Rik (RIKEN cDNA 4933429O19 gene) - Rat Genome Database

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Gene: 4933429O19Rik (RIKEN cDNA 4933429O19 gene) Mus musculus
Analyze
Symbol: 4933429O19Rik
Name: RIKEN cDNA 4933429O19 gene
RGD ID: 1611925
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: 1700031B11Rik
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391449,116,330 - 49,124,569 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1449,116,040 - 49,124,569 (+)EnsemblGRCm39 Ensembl
GRCm381448,878,873 - 48,887,112 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1448,878,586 - 48,887,112 (+)EnsemblGRCm38mm10GRCm38
MGSCv371449,498,548 - 49,506,787 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1445,077,516 - 45,085,678 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1425.36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in 4933429O19Rik
266 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
27226727Tibl21_mtibia length 21, 16 week (mouse)143412195752937457Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000227105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1449,116,362 - 49,123,525 (+)Ensembl
GRCm38.p6 Ensembl1448,878,905 - 48,886,068 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227742
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1449,116,043 - 49,117,550 (+)Ensembl
GRCm38.p6 Ensembl1448,878,586 - 48,880,093 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227828
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1449,116,330 - 49,123,519 (+)Ensembl
GRCm38.p6 Ensembl1448,878,873 - 48,886,062 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228316
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1449,116,341 - 49,124,569 (+)Ensembl
GRCm38.p6 Ensembl1448,878,884 - 48,887,112 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243342
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1449,116,040 - 49,124,161 (+)Ensembl
RefSeq Acc Id: NR_033783
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391449,116,330 - 49,124,569 (+)NCBI
GRCm381448,878,873 - 48,887,112 (+)ENTREZGENE
MGSCv371449,498,548 - 49,506,787 (+)RGD
Celera1445,077,516 - 45,085,678 (+)RGD
cM Map14 ENTREZGENE
Sequence:
Promoters
RGD ID:15094433
Promoter ID:EPDNEWNC_M2346
Type:initiation region
Name:4933429O19Rik_1
Description:RIKEN cDNA 4933429O19 gene [Source:MGISymbol;Acc:MGI:1914020]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381448,878,919 - 48,878,979EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000115008 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000228316 ENTREZGENE
MGD MGI:1914020 ENTREZGENE
NCBI Gene 66770 ENTREZGENE
PhenoGen 4933429O19Rik PhenoGen
RNAcentral URS000075A3F2 RNACentral