1700010L04Rik (RIKEN cDNA 1700010L04 gene) - Rat Genome Database

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Gene: 1700010L04Rik (RIKEN cDNA 1700010L04 gene) Mus musculus
Analyze
Symbol: 1700010L04Rik
Name: RIKEN cDNA 1700010L04 gene
RGD ID: 1611911
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39782,499,585 - 82,510,783 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl782,500,807 - 82,509,057 (+)EnsemblGRCm39 Ensembl
GRCm38782,851,599 - 82,861,575 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl782,851,599 - 82,859,849 (+)EnsemblGRCm38mm10GRCm38
MGSCv37790,000,109 - 90,008,359 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36782,727,784 - 82,736,034 (+)NCBIMGSCv36mm8
Celera780,266,724 - 80,274,890 (+)NCBICelera
Cytogenetic Map7D3NCBI
cM Map747.35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068   PMID:24952961  


Genomics

Variants

.
Variants in 1700010L04Rik
374 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:233
Count of miRNA genes:162
Interacting mature miRNAs:166
Transcripts:ENSMUST00000032872, ENSMUST00000178848, ENSMUST00000179662
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74915922783235415Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74919327883193390Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75112495485125093Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75112495485125093Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75214974886149748Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75588950887142720Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse
26884381Bzwq2_mbi-zygomatic width QTL 2, 5 week (mouse)76524974896949207Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
11553865Stmm1c_mskin tumor modifier of MSM 1c (mouse)76578898699788986Mouse
11553866Stmm1d_mskin tumor modifier of MSM 1d (mouse)76578898699788986Mouse
27095937Ulnl7_mulna length 7, 10 week (mouse)76644974898349207Mouse
12801463Rta1_mretinal aging 1 (mouse)76716802789089989Mouse
1301826Pgia3_mproteoglycan induced arthritis 3 (mouse)Not determined767290094101290240Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767290094101290240Mouse
1300620Pgia21_mproteoglycan induced arthritis 21 (mouse)Not determined767290094101290240Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768365595102365702Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
4142319Powg_mpost-ovarectomy weight gain (mouse)Not determined7285710592582163Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
4142212Png1_mPostnatal growth 1 (mouse)Not determined7432612192394346Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000032872
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl782,505,471 - 82,508,612 (+)Ensembl
GRCm38.p6 Ensembl782,856,263 - 82,859,404 (+)Ensembl
RefSeq Acc Id: ENSMUST00000178848
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl782,505,461 - 82,509,056 (+)Ensembl
GRCm38.p6 Ensembl782,856,253 - 82,859,848 (+)Ensembl
RefSeq Acc Id: ENSMUST00000179662
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl782,500,807 - 82,509,057 (+)Ensembl
GRCm38.p6 Ensembl782,851,599 - 82,859,849 (+)Ensembl
RefSeq Acc Id: XR_004934368
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39782,504,244 - 82,508,274 (+)NCBI
Sequence:
RefSeq Acc Id: XR_105177
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39782,499,585 - 82,509,057 (+)NCBI
GRCm38782,851,599 - 82,859,849 (+)NCBI
Sequence:
RefSeq Acc Id: XR_378283
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39782,499,585 - 82,510,783 (+)NCBI
GRCm38782,851,599 - 82,861,575 (+)NCBI
Sequence:
RefSeq Acc Id: XR_378287
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39782,504,590 - 82,508,274 (+)NCBI
GRCm38782,856,250 - 82,859,066 (+)NCBI
Sequence:
RefSeq Acc Id: XR_378288
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39782,505,514 - 82,508,274 (+)NCBI
GRCm38782,856,306 - 82,859,066 (+)NCBI
Sequence:
RefSeq Acc Id: XR_378289
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39782,504,591 - 82,508,274 (+)NCBI
GRCm38782,856,255 - 82,859,066 (+)NCBI
Sequence:
RefSeq Acc Id: XR_378290
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39782,504,597 - 82,508,274 (+)NCBI
GRCm38782,855,552 - 82,859,066 (+)NCBI
Sequence:
RefSeq Acc Id: XR_378291
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39782,504,244 - 82,508,274 (+)NCBI
GRCm38782,855,036 - 82,859,066 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein BAB24267 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000030636 Ensembl
MGD MGI:1916583 ENTREZGENE
NCBI Gene 619808 ENTREZGENE
PhenoGen 1700010L04Rik PhenoGen
UniProt Q9CVZ4_MOUSE UniProtKB/TrEMBL