4930568A12Rik (RIKEN cDNA 4930568A12 gene) - Rat Genome Database

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Gene: 4930568A12Rik (RIKEN cDNA 4930568A12 gene) Mus musculus
Analyze
Symbol: 4930568A12Rik
Name: RIKEN cDNA 4930568A12 gene
RGD ID: 1611756
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: hypothetical protein LOC75883
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39134,516,248 - 34,538,139 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl134,516,248 - 34,525,072 (-)EnsemblGRCm39 Ensembl
GRCm38134,477,167 - 34,499,058 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl134,477,167 - 34,485,933 (-)EnsemblGRCm38mm10GRCm38
Celera134,240,428 - 34,262,527 (-)NCBICelera
Cytogenetic Map1BNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in 4930568A12Rik
992 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11906535153065454Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11906535153065454Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2555019158273271Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000186117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl134,520,063 - 34,525,014 (-)Ensembl
GRCm38.p6 Ensembl134,480,982 - 34,485,933 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188292
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl134,516,248 - 34,524,692 (-)Ensembl
GRCm38.p6 Ensembl134,477,167 - 34,485,611 (-)Ensembl
RefSeq Acc Id: ENSMUST00000243648
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl134,523,828 - 34,525,072 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245014
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl134,523,832 - 34,525,011 (-)Ensembl
RefSeq Acc Id: XR_003947765
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39134,516,248 - 34,538,139 (-)NCBI
GRCm38134,477,167 - 34,499,058 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003947766
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39134,516,248 - 34,538,139 (-)NCBI
GRCm38134,477,167 - 34,499,058 (-)NCBI
Sequence:
RefSeq Acc Id: XR_373301
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39134,516,248 - 34,538,139 (-)NCBI
GRCm38134,477,167 - 34,499,058 (-)NCBI
Sequence:
RefSeq Acc Id: XR_865324
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39134,516,248 - 34,538,139 (-)NCBI
GRCm38134,477,167 - 34,499,058 (-)NCBI
Sequence:
RefSeq Acc Id: XR_865325
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39134,516,248 - 34,538,139 (-)NCBI
GRCm38134,477,167 - 34,499,058 (-)NCBI
Sequence:
RefSeq Acc Id: XR_865327
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39134,516,248 - 34,538,139 (-)NCBI
GRCm38134,477,167 - 34,499,058 (-)NCBI
Sequence:
Promoters
RGD ID:15092104
Promoter ID:EPDNEWNC_M18
Type:initiation region
Name:4930568A12Rik_1
Description:RIKEN cDNA 4930568A12 gene [Source:MGISymbol;Acc:MGI:1923133]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38134,485,962 - 34,486,022EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000101223 Ensembl
MGD MGI:1923133 ENTREZGENE
NCBI Gene 75883 ENTREZGENE
PhenoGen 4930568A12Rik PhenoGen