6330409D20Rik (RIKEN cDNA 6330409D20 gene) - Rat Genome Database

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Gene: 6330409D20Rik (RIKEN cDNA 6330409D20 gene) Mus musculus
Analyze
No known orthologs.
Symbol: 6330409D20Rik
Name: RIKEN cDNA 6330409D20 gene
RGD ID: 1611400
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: AA517851; hypothetical protein LOC70730; uncharacterized protein LOC70730
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,622,632 - 32,632,419 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,622,632 - 32,631,028 (-)EnsemblGRCm39 Ensembl
GRCm38232,732,620 - 32,741,016 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,732,620 - 32,741,016 (-)EnsemblGRCm38mm10GRCm38
MGSCv37232,588,140 - 32,596,939 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera232,439,365 - 32,448,160 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12040188   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in 6330409D20Rik
280 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:309
Count of miRNA genes:235
Interacting mature miRNAs:259
Transcripts:ENSMUST00000009695, ENSMUST00000151536
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
12904008Cfq6_mconditioned fear QTL 6 (mouse)23120303544508204Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse

Markers in Region
AA517851  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38232,740,677 - 32,740,805UniSTSGRCm38
MGSCv37232,596,197 - 32,596,325UniSTSGRCm37
Celera232,447,418 - 32,447,546UniSTS
Cytogenetic Map2BUniSTS
Whitehead/MRC_RH2541.57UniSTS
RH125583  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38232,740,723 - 32,740,849UniSTSGRCm38
MGSCv37232,596,243 - 32,596,369UniSTSGRCm37
Celera232,447,464 - 32,447,590UniSTS
Cytogenetic Map2BUniSTS
D2S171  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38952,108,245 - 52,109,103UniSTSGRCm38
GRCm38232,733,495 - 32,734,668UniSTSGRCm38
MGSCv37232,589,015 - 32,590,188UniSTSGRCm37
MGSCv37951,916,350 - 51,917,208UniSTSGRCm37
Celera949,384,222 - 49,385,080UniSTS
Celera232,440,240 - 32,441,413UniSTS
Cytogenetic Map2BUniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000009695   ⟹   ENSMUSP00000009695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl232,622,632 - 32,631,028 (-)Ensembl
GRCm38.p6 Ensembl232,732,620 - 32,741,016 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151536
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl232,622,632 - 32,624,890 (-)Ensembl
GRCm38.p6 Ensembl232,732,620 - 32,734,878 (-)Ensembl
RefSeq Acc Id: NR_177960
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39232,622,632 - 32,632,419 (-)NCBI
RefSeq Acc Id: NR_177961
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39232,622,632 - 32,632,419 (-)NCBI
RefSeq Acc Id: NR_177962
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39232,622,632 - 32,631,350 (-)NCBI
Protein Sequences
GenBank Protein BAB31096 (Get FASTA)   NCBI Sequence Viewer  
  EDL08572 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000009695   ⟸   ENSMUST00000009695

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A2AK85-F1-model_v2 AlphaFold A2AK85 1-162 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000009551 Ensembl
MGD MGI:1917980 ENTREZGENE
NCBI Gene 70730 ENTREZGENE
PhenoGen 6330409D20Rik PhenoGen
RNAcentral URS0002617824 RNACentral
  URS0002617857 RNACentral
  URS0002617A51 RNACentral
UniProt Q9D3A7_MOUSE UniProtKB/TrEMBL