A930038B10Rik (RIKEN cDNA A930038B10 gene) - Rat Genome Database

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Gene: A930038B10Rik (RIKEN cDNA A930038B10 gene) Mus musculus
Analyze
Symbol: A930038B10Rik
Name: RIKEN cDNA A930038B10 gene
RGD ID: 1611050
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391434,482,152 - 34,492,058 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1434,481,359 - 34,492,510 (+)EnsemblGRCm39 Ensembl
GRCm381434,760,195 - 34,770,101 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1434,759,402 - 34,770,553 (+)EnsemblGRCm38mm10GRCm38
Celera1431,026,682 - 31,033,334 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1420.84NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068  


Genomics

Variants

.
Variants in A930038B10Rik
333 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:191
Count of miRNA genes:178
Interacting mature miRNAs:183
Transcripts:ENSMUST00000180412, ENSMUST00000181044
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
14696688Rfq2_mrearing frequency QTL 2, males (mouse)143372195735721957Mouse
27226727Tibl21_mtibia length 21, 16 week (mouse)143412195752937457Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000180412
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1434,481,359 - 34,487,973 (+)Ensembl
GRCm38.p6 Ensembl1434,759,402 - 34,766,016 (+)Ensembl
RefSeq Acc Id: ENSMUST00000181044
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1434,482,184 - 34,492,510 (+)Ensembl
GRCm38.p6 Ensembl1434,760,227 - 34,770,553 (+)Ensembl
RefSeq Acc Id: XR_001781219
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391434,482,152 - 34,487,978 (+)NCBI
GRCm381434,760,195 - 34,766,021 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004938556
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391434,482,152 - 34,492,058 (+)NCBI
Sequence:
RefSeq Acc Id: XR_383352
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391434,482,152 - 34,487,978 (+)NCBI
GRCm381434,760,195 - 34,766,021 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097310 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000181044 ENTREZGENE
MGD MGI:2443813 ENTREZGENE
NCBI Gene 320323 ENTREZGENE
PhenoGen A930038B10Rik PhenoGen