1700074H08Rik (RIKEN cDNA 1700074H08 gene) - Rat Genome Database

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Gene: 1700074H08Rik (RIKEN cDNA 1700074H08 gene) Mus musculus
Analyze
Symbol: 1700074H08Rik
Name: RIKEN cDNA 1700074H08 gene
RGD ID: 1610797
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: CH25-211A23.1; hypothetical protein LOC73480
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913120,141,578 - 120,143,118 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13120,141,576 - 120,143,124 (+)EnsemblGRCm39 Ensembl
GRCm3813119,680,042 - 119,681,582 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13119,680,040 - 119,681,588 (+)EnsemblGRCm38mm10GRCm38
Celera13124,055,211 - 124,056,710 (+)NCBICelera
Cytogenetic Map13D2.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in 1700074H08Rik
42 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
14746974Manh75_mmandible shape 75 (mouse)1399386647120883175Mouse
12879496Fexq2_mfear expression QTL 2 (mouse)13100741519120883175Mouse
4142400Tgq24_mtriglyceride QTL 24 (mouse)Not determined102602630120883175Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000189831
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13120,141,576 - 120,143,124 (+)Ensembl
GRCm38.p6 Ensembl13119,680,040 - 119,681,588 (+)Ensembl
RefSeq Acc Id: NR_138420
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913120,141,578 - 120,143,118 (+)NCBI
GRCm3813119,680,042 - 119,681,582 (+)NCBI
Sequence:
Promoters
RGD ID:8681400
Promoter ID:EPDNEW_M18731
Type:multiple initiation site
Name:1700074H08Rik_1
Description:Mus musculus RIKEN cDNA 1700074H08 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3813119,680,053 - 119,680,113EPDNEW
RGD ID:15094382
Promoter ID:EPDNEWNC_M2290
Type:multiple initiation site
Name:1700074H08Rik_1
Description:RIKEN cDNA 1700074H08 gene [Source:MGISymbol;Acc:MGI:1920730]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3813119,680,053 - 119,680,113EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000099872 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000189831 ENTREZGENE
MGD MGI:1920730 ENTREZGENE
NCBI Gene 73480 ENTREZGENE
PhenoGen 1700074H08Rik PhenoGen
RNAcentral URS00009B1EB0 RNACentral