1700121C08Rik (RIKEN cDNA 1700121C08 gene)

Gene: 1700121C08Rik (RIKEN cDNA 1700121C08 gene) Mus musculus

Analyze

Symbol:

1700121C08Rik

Name:

RIKEN cDNA 1700121C08 gene

RGD ID:

1610650

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

MODEL

Previously known as:

hypothetical protein LOC78641; uncharacterized protein LOC78641

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	123,746,250 - 123,752,655 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	123,727,415 - 123,753,306 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	123,852,457 - 123,858,862 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	123,833,622 - 123,859,513 (-)	Ensembl	GRCm38		mm10	GRCm38
Celera	4	122,181,743 - 122,188,384 (-)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	57.42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:14610273	PMID:16141072	PMID:16141073	PMID:24316575

Genomics

Variants

Variants in 1700121C08Rik
159 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	100
Count of miRNA genes:	99
Interacting mature miRNAs:	100
Transcripts:	ENSMUST00000137546
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11567249	Elorr3_m	ethanol induced loss of righting response 3 (mouse)					4	3722677	156268235	Mouse
26884449	Sklq2_m	skull length QTL 2, 5 week (mouse)					4	36700000	128993793	Mouse
1357895	Ctrcts_m	cataract severity (mouse)			Not determined		4	45709925	138342753	Mouse
4141900	Skts-fp1_m	skin tumor susceptibility in FVB and PWK 1 (mouse)			Not determined		4	53550839	124055180	Mouse
27095905	Scvln3_m	sacral vertebrae length 2, 5 week (mouse)					4	55600000	128993793	Mouse
26884437	Sklq13_m	skull length QTL 13, 16 week (mouse)					4	57700000	155684457	Mouse
25314312	Syncl2_m	synaptonemal complex length 2 (mouse)					4	65718237	146584457	Mouse
27095917	Scvln14_m	sacral vertebrae length 2, 16 week (mouse)					4	68018237	130277062	Mouse
26884445	Sklq7_m	skull length QTL 7, 10 week (mouse)					4	68018237	150884457	Mouse
27095924	Pglq2_m	pelvic girdle length QTL 2, 5 week (mouse)					4	69118237	130727311	Mouse
1301597	Anxty_m	anxiety (mouse)			Not determined		4	74137574	128009280	Mouse
4141623	W6q13_m	weight 6 weeks QTL 13 (mouse)			Not determined			88982069	140468203	Mouse
4141549	W10q10_m	weight 10 weeks QTL 10 (mouse)			Not determined			88982069	140468203	Mouse
4141093	W3q17_m	weight 3 weeks QTL 17 (mouse)			Not determined			88982069	140468203	Mouse
39128212	Lwq21_m	liver weight QTL 21 (mouse)					4	88982069	140468203	Mouse
1301823	Bmd7_m	bone mineral density 7 (mouse)			Not determined		4	88982069	151654550	Mouse
1300918	Stheal4_m	soft tissue heal 4 (mouse)			Not determined		4	89969627	123969747	Mouse
11553870	Cmmm_m	carcinoma modifier of MSM (mouse)					4	90590668	124590781	Mouse
15039368	Nmrs19_m	NAFLD-associated magnetic resonance shift 19 (mouse)					4	90882780	124882780	Mouse
13208562	Wght7_m	weight 7 (mouse)					4	90888237	148084457	Mouse
12904002	Opfaq9_m	open field activity QTL 9 (mouse)					4	92975790	126975790	Mouse
1301731	Cafq2_m	caffeine metabolism QTL 2 (mouse)			Not determined		4	94732255	128732454	Mouse
1301233	Sbw2_m	splenomegaly-NZB x NZW 2 (mouse)			Not determined		4	94957579	128009280	Mouse
1301815	Sles2_m	systemic lupus erythmatosus suppressor 2 (mouse)			Not determined		4	94957579	150676858	Mouse
1300580	Lbw2_m	lupus NZB x NZW 2 (mouse)			Not determined		4	98545539	128009280	Mouse
1301106	Skts7_m	skin tumor susceptibility 7 (mouse)			Not determined		4	100071971	134072206	Mouse
1301847	Fecq2_m	fecundity QTL 2 (mouse)			Not determined		4	100071971	134072206	Mouse
14696689	Gdq2_m	grooming duration QTL 2, females (mouse)					4	100857197	124893793	Mouse
12880433	Fgf23lq1_m	FGF23 serum level QTL 1 (mouse)					4	101157197	135157197	Mouse
15039377	Bw45_m	body weight QTL 45 (mouse)					4	105705794	139705794	Mouse
15039378	Adip30_m	adiposity 30 (mouse)					4	105705794	139705794	Mouse
15039382	Ltgq7_m	liver triglyceride QTL 7 (mouse)					4	105705794	139705794	Mouse
12910794	Pwbwq8_m	post-weaning body weight QTL 8 (mouse)					4	105835310	141433838	Mouse
12910797	Pwgrq4_m	pre-weaning growth rate QTL 4 (mouse)					4	105835310	141433838	Mouse
12910808	Pwbwq9_m	post-weaning body weight QTL 9 (mouse)					4	105835310	141433838	Mouse
12910813	Pwbwq4_m	pre-weaning body weight QTL 4 (mouse)					4	105835310	141433838	Mouse
1357800	Tgq3_m	triglyceride QTL 3 (mouse)			Not determined		4	107055093	141055180	Mouse
1300809	Ccrs2_m	corpus callosum hemisphere surface size 2 (mouse)			Not determined		4	107264957	141265153	Mouse
1300781	Lith8_m	lithogenic gene 8 (mouse)			Not determined		4	107264957	141265153	Mouse
1300663	Start2_m	startle response 2 (mouse)			Not determined		4	107264957	141265153	Mouse
1301382	Arvm2_m	autoimmune renal vasculitis 2 (mouse)			Not determined		4	107791564	141791756	Mouse
10755522	Hgb1_m	hemoglobin 1 (mouse)					4	108477692	142477692	Mouse
10755521	Hct1_m	hematocrit 1 (mouse)					4	108477692	142477692	Mouse
10755520	Rbc1_m	red blood cell count 1 (mouse)					4	108477692	142477692	Mouse
10412072	Ssen1_m	suseptibility to Sendai virus 1 (mouse)			Not determined		4	109658132	133154782	Mouse
13208565	Bmiq6_m	body mass index QTL 6 (mouse)					4	110857197	125893793	Mouse
1300839	Dyscalc2_m	dystrophic cardiac calcinosis 2 (mouse)			Not determined		4	111009051	145009280	Mouse
1300743	Skull6_m	skull morphology 6 (mouse)			Not determined		4	111009051	145009280	Mouse
15039385	Mvlq3_m	macrovesicular liver lesion QTL 3 (mouse)					4	112182386	146182386	Mouse
4141001	Tgq17_m	triglyceride QTL 17 (mouse)			Not determined			112523489	146523489	Mouse
10047132	Albq19_m	albuminuria QTL 19 (mouse)			Not determined		4	112824389	146824389	Mouse
1300655	Nidds_m	non-insulin-dependent diabetes mellitus in SJL (mouse)			Not determined		4	115030777	129465915	Mouse
4142493	Femwf13_m	femur work to failure 13 (mouse)			Not determined			116154678	150154782	Mouse
1301996	Mmtg2_m	modifier of mammary tumor growth 2 (mouse)			Not determined		4	116270979	124055180	Mouse
1302078	Sluc21_m	susceptibility to lung cancer 21 (mouse)			Not determined		4	117401141	151401275	Mouse
14746982	Manh56_m	mandible shape 56 (mouse)					4	117815917	151815917	Mouse
1302102	Bis1_m	beta-carboline-induced seizures 1 (mouse)			Not determined		4	119864433	153864536	Mouse
1301964	Bw8q2_m	body weight at 8 weeks QTL 2 (mouse)			Not determined		4	119864433	153864536	Mouse
13503348	Bntq18_m	bone traits QTL 18 (mouse)					4	120617848	154617995	Mouse
10412210	Cypr6_m	cytokine production 6 (mouse)			Not determined		4	120617848	154617995	Mouse
4141180	Ssic1_m	susceptibility to small intestinal cancer 1 (mouse)			Not determined			120674005	154674151	Mouse
1300803	Sluc6_m	susceptibility to lung cancer 6 (mouse)			Not determined		4	120674005	154674151	Mouse
10043985	Stheal12_m	soft tissue heal 12 (mouse)			Not determined		4	121342649	155342753	Mouse
4142061	Chlq16_m	circulating hormone level QTL 16 (mouse)			Not determined		4	121342649	155342753	Mouse
1301452	Elsgp1_m	elevated serum gp70 1 (mouse)			Not determined		4	121342649	155342753	Mouse
14695037	Ifbl2_m	interfrontal bone length 2 (mouse)					4	123395188	123892985	Mouse
14695038	Ifbw1_m	interfrontal bone width 1 (mouse)					4	123395188	123892985	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_868095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_868097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_868098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK018971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL683811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000137546

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	123,727,415 - 123,753,306 (-)	Ensembl
GRCm38.p6 Ensembl	4	123,833,622 - 123,859,513 (-)	Ensembl

RefSeq Acc Id:

XR_868095

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	123,746,250 - 123,751,057 (-)	NCBI
GRCm38	4	123,852,457 - 123,857,080 (-)	NCBI

Sequence:

show sequence

GCAATGACCACCACCCTTAAAAACTTTTGGAAAAATAAAATTGTTAATGAAGCAAGGTTGAAAT
GTTTTTAATACTGGCTCTGATGTAGAAAATTTTAAACAAGTTGAAGTTGAGAAAGGCACACTCA
TATTAGTAAAGCCTTTTGTAAAGGGACACTTTATGGTCAGGGAACAAGAACAATGGCAGCGCTG
GCTGATGCGACTCTCACTGAGGCTGGACTGGTGATAATTGATTTCTTATACTCATTTTTCCCCC
TCAGCTTCCTGTTACGATTTATGACGAATTGCTGATGAGTAGATATGCATTTTGAGGACTTAAG
GGACTCCAGCACTGCCACAATGCCAAGCCTCAGCTGCTCTCCATGACCCCGTCATGCCTTCAAA
ACCACTACCACCTCACTGACTCTTGCACTATCAAGTTTGGTGACAATGCAAGGCATCTTGATTC
GCTGAAGAATGACACCCTGGACTTAAATAGTATGTAAACACAAGGAGTGTTTTATTCTGCAGAA
GACAAGAATGCTGGAATGTCCCATTACCAAACTAGAGAGACTCCCCAAGTGAGCTTGCAGGCCT
TATGTAAAGCACATTAGGGAATTCCGTGATAAGTCAACCTCTATGTTAATCTGTTGGGTCCATT
TCTGTGGACATTCCATTACCAGGTTGTGGGGGCTGGAAACTTGCTGGGGAGGTCTGGAAACTGT
TGCTGAGGAAGTCTGGAAACTGCTGCTGACCC

hide sequence

RefSeq Acc Id:

XR_868097

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	123,748,373 - 123,751,886 (-)	NCBI
GRCm38	4	123,854,580 - 123,858,541 (-)	NCBI

Sequence:

show sequence

CTCACAATAATGATGCTGGATCACTTTCAAGCATTGCCGCTGGAGCAGATTAATGATTCCATCA
CCACCCTAGGAAAGTGGGCGGTGCCACCAGACAGAAGAACTGCTTCCTGTTACGATTTATGACG
AATTGCTGATGAGTAGATATGCATTTTGAGGACTTAAGGGACTCCAGCACTGCCACAATGCCAA
GCCTCAGCTGCTCTCCATGACCCCGTCATGCCTTCAAAACCACTACCACCTCACTGACTCTTGC
ACTATCAAGTTTGGTGACAATGCAAGGTACTGTTGCGGCTGGCCAGCGGCTCAATTGTCTCGGT
TCTAGCCTGGGAGGCATCCTGGAATCTGGAAGAGAAGAGGGAACTAGGCGATGTGAGAAAGAAT
GGAACCAAGACAACTAGTCTGTT

hide sequence

RefSeq Acc Id:

XR_868098

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	123,748,373 - 123,752,655 (-)	NCBI
GRCm38	4	123,854,580 - 123,858,862 (-)	NCBI

Sequence:

show sequence

GGCATCCACAGAGCCCGAACAGCAACAGTTAGATAAACTTTTCCGCTGGAGACAAAGCTTCCTG
TTACGATTTATGACGAATTGCTGATGAGTAGATATGCATTTTGAGGACTTAAGGGACTCCAGCA
CTGCCACAATGCCAAGCCTCAGCTGCTCTCCATGACCCCGTCATGCCTTCAAAACCACTACCAC
CTCACTGACTCTTGCACTATCAAGTTTGGTGACAATGCAAGGTACTGTTGCGGCTGGCCAGCGG
CTCAATTGTCTCGGTTCTAGCCTGGGAGGCATCCTGGAATCTGGAAGAGAAGAGGGAACTAGGC
GATGTGAGAAAGAATGGAACCAAGACAACTAGTCTGTT

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000086275	Ensembl
MGD	MGI:1925891	ENTREZGENE
NCBI Gene	1700121C08Rik	ENTREZGENE
PhenoGen	1700121C08Rik	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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