Ipw (imprinted gene in the Prader-Willi syndrome region) - Rat Genome Database

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Gene: Ipw (imprinted gene in the Prader-Willi syndrome region) Mus musculus
Analyze
Symbol: Ipw (Ensembl: Snhg14)
Name: imprinted gene in the Prader-Willi syndrome region (Ensembl:small nucleolar RNA host gene 14)
RGD ID: 1610416
MGI Page MGI
Description: Is expressed in brain.
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39759,268,906 - 59,328,626 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl758,957,672 - 59,625,507 (-)EnsemblGRCm39 Ensembl
GRCm38759,619,158 - 59,678,878 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl759,307,924 - 59,975,759 (-)EnsemblGRCm38mm10GRCm38
MGSCv37766,874,528 - 66,934,248 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map7B5NCBI
cM Map734.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9063754   PMID:9590284   PMID:10339753   PMID:10349636   PMID:10508517   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11668390   PMID:12466851   PMID:12971993   PMID:15620220  
PMID:16141072   PMID:16141073   PMID:18166085   PMID:23139813   PMID:33833130  


Genomics

Variants

.
Variants in Ipw
1152 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74524974879249748Mouse
25314302Vmm2_mvariable multisystem mineralization 2, heart (mouse)74714974874149748Mouse
12738423Lfibq6_mliver fibrosis QTL 6 (mouse)74769437866704862Mouse
1302141Fcsa6_mfemoral cross-sectional area 6 (mouse)Not determined74838446182384607Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74915922783235415Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74919327883193390Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75112495485125093Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75112495485125093Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75214974886149748Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75588950887142720Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
13432171Rosd1_mrotarod saline difference 1 (mouse)75919437869004862Mouse

Markers in Region
33.MMHAP27FRC12.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7CUniSTS
cM Map729.0UniSTS
Whitehead_YAC7 UniSTS
D7Mit59  
Mouse AssemblyChrPosition (strand)SourceJBrowse
cM Map727.8UniSTS
Whitehead Genetic726.2UniSTS
Whitehead_YAC7 UniSTS
Ipw  
Mouse AssemblyChrPosition (strand)SourceJBrowse
cM Map734.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000185272
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl759,342,186 - 59,345,959 (-)Ensembl
GRCm38.p6 Ensembl759,692,438 - 59,696,211 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185693
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl759,268,906 - 59,524,497 (-)Ensembl
GRCm38.p6 Ensembl759,619,158 - 59,874,749 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185815
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl759,326,141 - 59,345,978 (-)Ensembl
GRCm38.p6 Ensembl759,676,393 - 59,696,230 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185890
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl759,596,378 - 59,623,205 (-)Ensembl
GRCm38.p6 Ensembl759,946,630 - 59,973,457 (-)Ensembl
RefSeq Acc Id: ENSMUST00000186345
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl759,348,458 - 59,356,131 (-)Ensembl
GRCm38.p6 Ensembl759,698,710 - 59,706,383 (-)Ensembl
RefSeq Acc Id: ENSMUST00000187666
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl759,420,025 - 59,512,616 (-)Ensembl
GRCm38.p6 Ensembl759,770,277 - 59,862,868 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188162
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl759,361,107 - 59,554,434 (-)Ensembl
GRCm38.p6 Ensembl759,711,359 - 59,904,686 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188262
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl759,095,451 - 59,102,987 (-)Ensembl
GRCm38.p6 Ensembl759,445,703 - 59,453,239 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188976
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl759,619,325 - 59,624,179 (-)Ensembl
GRCm38.p6 Ensembl759,969,577 - 59,974,431 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189408
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl759,034,345 - 59,060,921 (-)Ensembl
GRCm38.p6 Ensembl759,384,597 - 59,411,173 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189581
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl759,587,119 - 59,625,507 (-)Ensembl
GRCm38.p6 Ensembl759,937,371 - 59,975,759 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189653
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,965,070 - 58,968,205 (-)Ensembl
GRCm38.p6 Ensembl759,315,322 - 59,318,457 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190666
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,957,672 - 58,973,897 (-)Ensembl
GRCm38.p6 Ensembl759,307,924 - 59,324,149 (-)Ensembl
RefSeq Acc Id: ENSMUST00000191191
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl759,316,182 - 59,328,349 (-)Ensembl
GRCm38.p6 Ensembl759,666,434 - 59,678,601 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193102
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl759,294,998 - 59,295,291 (-)Ensembl
GRCm38.p6 Ensembl759,645,250 - 59,645,543 (-)Ensembl
RefSeq Acc Id: NR_015351
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39759,268,906 - 59,328,626 (-)NCBI
GRCm38759,619,158 - 59,678,878 (-)ENTREZGENE
MGSCv37766,874,528 - 66,934,248 (-)RGD
cM Map7 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000100826 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000185693 ENTREZGENE
MGD MGI:892030 ENTREZGENE
NCBI Gene 16353 ENTREZGENE
PhenoGen Ipw PhenoGen
RNAcentral URS00009C3FEF RNACentral