4922502N22Rik (RIKEN cDNA 4922502N22 gene)

Gene: 4922502N22Rik (RIKEN cDNA 4922502N22 gene) Mus musculus

Analyze

Symbol:

4922502N22Rik

Name:

RIKEN cDNA 4922502N22 gene

RGD ID:

1610363

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC70962

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	139,292,595 - 139,299,574 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	139,292,595 - 139,299,574 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	139,315,597 - 139,322,576 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	139,315,597 - 139,322,576 (-)	Ensembl	GRCm38		mm10	GRCm38
Celera	6	142,390,824 - 142,397,800 (-)	NCBI		Celera
Cytogenetic Map	6	G1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073

Genomics

Variants

Variants in 4922502N22Rik
225 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48696934	148351498	Mouse
10043864	T2dm4sa_m	type 2 diabetes mellitus 4 in SMXA RI mice (mouse)			Not determined		6	83690851	146954059	Mouse
11353842	Bmiq4_m	body mass index QTL 4 (mouse)					6	92584287	146330736	Mouse
4141940	W6q5_m	weight 6 weeks QTL 5 (mouse)			Not determined			96632912	146535124	Mouse
4142416	Egq11_m	early growth QTL 11 (mouse)			Not determined			96632912	146535124	Mouse
1357555	Tesq2_m	testis weight QTL 2 (mouse)			Not determined		6	96632912	146535124	Mouse
1301518	Bbaa5_m	B.burgdorferi-associated arthritis 5 (mouse)			Not determined		6	98483798	145881170	Mouse
10412207	Cypr5_m	cytokine production 5 (mouse)			Not determined		6	110815180	144815323	Mouse
13463481	Mcvq14_m	mean corpuscular volume QTL 14 (mouse)					6	111142448	145142541	Mouse
11252138	Clas1_m	carcinogen-induced lung adenoma susceptibility 1 (mouse)					6	112246918	146954059	Mouse
4140980	Mvwf2_m	modifier of von Willebrand factor 2 (mouse)			Not determined			114345693	145601739	Mouse
1301658	Radpf3_m	radiation pulmonary fibrosis 3 (mouse)			Not determined		6	115219814	146330736	Mouse
4141889	Qui_m	quinine sensitivity, taste (mouse)			Not determined			115546805	149549364	Mouse
4141194	Cyx_m	cycloheximide tasting (mouse)			Not determined			115546805	149549364	Mouse
4141295	Rua_m	raffinose acetate tasting (mouse)			Not determined			115546805	149549364	Mouse
1301927	Etohcta6_m	ethanol conditioned taste aversion 6 (mouse)			Not determined		6	115578005	149578150	Mouse
4142079	Skmw15_m	skeletal muscle weight 15 (mouse)			Not determined		6	116829851	149588044	Mouse
1301152	Athsq2_m	atherosclerosis susceptibility QTL 2 (mouse)			Not determined		6	117059949	149588044	Mouse
1301804	Bulb2_m	bulb size 2 (mouse)			Not determined		6	120416806	149588044	Mouse
10449436	Pas17_m	pulmonary adenoma susceptibility 17 (mouse)					6	124334273	145601739	Mouse
1302089	Wta2_m	weight adult 2 (mouse)			Not determined		6	125269523	149588044	Mouse
10449437	Pas15_m	pulmonary adenoma susceptibility 15 (mouse)					6	128180868	149588044	Mouse
10053680	Lith25_m	lithogenic gene 25 (mouse)			Not determined		6	128601582	149588044	Mouse
1301027	Hdlq12_m	HDL QTL 12 (mouse)			Not determined		6	128601582	149588044	Mouse
10766452	Sle23_m	systematic lupus erythematosus susceptibility 23 (mouse)					6	128601582	149588044	Mouse
1301084	Bpq5_m	blood pressure QTL 5 (mouse)			Not determined		6	129330484	149588044	Mouse
4141974	Skmw14_m	skeletal muscle weight 14 (mouse)			Not determined		6	129330484	149588044	Mouse
1301686	Trmq1_m	T cell ratio modifier QTL 1 (mouse)			Not determined		6	129330484	149588044	Mouse
1301620	Insq8_m	insulin QTL 8 (mouse)			Not determined		6	129534979	149588044	Mouse
1558959	Eamcd2_m	experimental autoimmune myocarditis 2 (mouse)			Not determined		6	129953954	149588044	Mouse
14746990	Manh61_m	mandible shape 61 (mouse)					6	130156355	149588044	Mouse
14746999	Mancz6_m	mandible centroid size 6 (mouse)					6	130156355	149588044	Mouse
12879916	Shm5_m	sperm head morphology 5 (mouse)					6	132266532	145601739	Mouse
1301820	Mop1_m	morphine preference 1 (mouse)			Not determined		6	132578005	146330736	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_045149	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC132618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK015023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK132719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000204038

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	139,292,595 - 139,299,574 (-)	Ensembl
GRCm38.p6 Ensembl	6	139,315,597 - 139,322,576 (-)	Ensembl

RefSeq Acc Id:

NR_045149

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	139,292,595 - 139,299,574 (-)	NCBI
GRCm38	6	139,315,597 - 139,322,576 (-)	ENTREZGENE
Celera	6	142,390,824 - 142,397,800 (-)	ENTREZGENE
cM Map	6		ENTREZGENE

Sequence:

show sequence

GGATTCGCCAGCCTAACGTAGAGGTGGAGGAAGACGCAGATCCTAAAAGAAGAGAGACAGTAGA
GACAGCAAGGTTTCTCACCTATGGGAAACAGCAGAGATTTGGGGGATTTTCAAGCCAACTATAA
AGCATACAACCAGCTTCTGATTCAATCTCTACATAAAGTTTCAGAGGAAATGATGACACACAAC
AGGGAAAGCACGGTGGAATGAGAACTGACATGAGTGTGACTTTGCCACAGAATCATCAGCACCT
CAGGAAAGTTTCATCTGCACAGTCCCACGAGGCTGCCTGGCTTTCTTCCCTGTTGAGATGCCTG
TGCCATTTGGTTAAATGTCCCGTAGTACATGTGCAAAGCTCTTTCTTAGTTAAAACTTCACAGC
TAAAATAGAGTGGTGAGCATAGCACATGCATGTGCATCTGCCCATCACCCTGGACTTGTATAGA
GCTACAATGCTGTTTTTCAAAGGTGATGGTACGAATATGACAAGCATGTTTCTTTTTTTTTTTT
TTCAGATCATAGGCCATTCTCCTTGACAGCCTTCCATGTTGTGTCCCAAGATCCGCTGAAGCAG
CAGCTTGGCATTTCATCTCGACTGATGAATCAGCAAGCCTCCGGCATCTTTCAGGACCTGCCCA
TCCTGCCTGGCCTGTGCAAGGTTACAGATGCCAGGCCACACAATACCTGGCTTTTACATGGGTT
CTAGGATTCAAAGTCACATTTTCATACATAGTTGGACACTTTACCATCTGACCCATCTTTCCAT
TTTATGCTTTTCCTCTTTTAGAACCCTTGTTATTTGACTGGCTTATTGGGTCAAACTACAAATA
GCAAAAATAAACAATCTAGAGAAAATGTTAATTGTTGAGTGGTACTGAGCACTACCCTCAACAA
TACTGCATAGTGAAAGTGTGCTAATTATTCACAGATGATAACACAGTGTCTGAGACAAGCTTTA
ACTCATGTCTGCCTATGTGATAGGAAATTTTAAACTGAAATGAAGCCCATCATTCAAAGAATGT
CCTCACAATGAACTGGTAAAGAAGGATCTCAAATAAATAATGAATATCCTTGTTTTCCTTCCAA
TTTTATACCCTTATTTTGTCTAGTAGCTGAACTCTGCAGATAAAGTAAAAGAGTTGAAAAC

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Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000108128	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000204038	ENTREZGENE
MGD	MGI:1918212	ENTREZGENE
NCBI Gene	70962	ENTREZGENE
PhenoGen	4922502N22Rik	PhenoGen
RNAcentral	URS000075BE2D	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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