1700029J03Rik (RIKEN cDNA 1700029J03 gene) - Rat Genome Database

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Gene: 1700029J03Rik (RIKEN cDNA 1700029J03 gene) Mus musculus
Analyze
Symbol: 1700029J03Rik
Name: RIKEN cDNA 1700029J03 gene
RGD ID: 1610319
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC72264
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391693,193,703 - 93,255,760 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1693,188,565 - 93,255,760 (-)EnsemblGRCm39 Ensembl
GRCm381693,396,815 - 93,458,872 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1693,391,677 - 93,458,872 (-)EnsemblGRCm38mm10GRCm38
Celera1694,480,423 - 94,543,879 (-)NCBICelera
Cytogenetic Map16C4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12040188   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in 1700029J03Rik
2293 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301125Sluc27_msusceptibility to lung cancer 27 (mouse)Not determined166160864495608764Mouse
4141113Tgq28_mtriglyceride QTL 28 (mouse)Not determined6298664696986646Mouse
1300928Etia_methanol induced activation (mouse)Not determined166331390797314016Mouse
1558740Bpq9_mblood pressure QTL 9 (mouse)Not determined166332733697327472Mouse
1302194Pgia10_mproteoglycan induced arthritis 10 (mouse)Not determined166860072298008968Mouse
1301032Tauph_mtau phosphorylation (mouse)Not determined166907613298008968Mouse
11049573Lmr18b_mleishmaniasis resistance 18b (mouse)166912761198008968Mouse
11049574Lmr18a_mleishmaniasis resistance 18a (mouse)166912761198008968Mouse
4142262Lmr18_mleishmaniasis resistance 18 (mouse)Not determined166912761198008968Mouse
11522753Cocia19_mcocaine-induced activity, QTL 19 (mouse)166925448298008968Mouse
1301598Renf2_mrenal failure 2 (mouse)Not determined167038025298008968Mouse

Markers in Region
G67810  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381693,451,624 - 93,451,835UniSTSGRCm38
MGSCv371693,451,869 - 93,452,080UniSTSGRCm37
Celera1694,536,559 - 94,536,770UniSTS
cM Map1610.69UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000185803
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1693,193,703 - 93,255,760 (-)Ensembl
GRCm38.p6 Ensembl1693,396,815 - 93,458,872 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189879
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1693,188,565 - 93,222,798 (-)Ensembl
GRCm38.p6 Ensembl1693,391,677 - 93,425,910 (-)Ensembl
RefSeq Acc Id: ENSMUST00000231275
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1693,193,697 - 93,255,744 (-)Ensembl
GRCm38.p6 Ensembl1693,396,809 - 93,458,856 (-)Ensembl
RefSeq Acc Id: ENSMUST00000231859
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1693,229,752 - 93,255,693 (-)Ensembl
GRCm38.p6 Ensembl1693,432,864 - 93,458,805 (-)Ensembl
RefSeq Acc Id: NR_040494
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391693,193,703 - 93,255,760 (-)NCBI
GRCm381693,396,815 - 93,458,872 (-)ENTREZGENE
Celera1694,480,423 - 94,543,879 (-)ENTREZGENE
cM Map16 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein EDL03773 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:13674494
Promoter ID:EPDNEW_M21396
Type:single initiation site
Name:1700029J03Rik_1
Description:Mus musculus RIKEN cDNA 1700029J03 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381693,458,872 - 93,458,932EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000099968 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000185803 ENTREZGENE
MGD MGI:1919514 ENTREZGENE
NCBI Gene 72264 ENTREZGENE
PhenoGen 1700029J03Rik PhenoGen
RNAcentral URS000075E3A6 RNACentral