1700092C10Rik (RIKEN cDNA 1700092C10 gene) - Rat Genome Database

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Gene: 1700092C10Rik (RIKEN cDNA 1700092C10 gene) Mus musculus
Analyze
Symbol: 1700092C10Rik
Name: RIKEN cDNA 1700092C10 gene
RGD ID: 1610287
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Previously known as: hypothetical protein LOC73554; uncharacterized protein LOC73554
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391469,402,248 - 69,409,292 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1469,402,246 - 69,409,306 (-)EnsemblGRCm39 Ensembl
GRCm381469,164,799 - 69,171,843 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1469,164,797 - 69,171,857 (-)EnsemblGRCm38mm10GRCm38
Celera1466,942,899 - 66,952,267 (-)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1436.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:128
Count of miRNA genes:119
Interacting mature miRNAs:122
Transcripts:ENSMUST00000172547
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000172547
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1469,402,246 - 69,409,306 (-)Ensembl
GRCm38.p6 Ensembl1469,164,797 - 69,171,857 (-)Ensembl
RefSeq Acc Id: NR_045931
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391469,402,248 - 69,409,292 (-)NCBI
GRCm381469,164,799 - 69,171,843 (-)ENTREZGENE
Celera1466,942,899 - 66,952,267 (-)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
Promoters
RGD ID:8682842
Promoter ID:EPDNEW_M19452
Type:initiation region
Name:1700092C10Rik_1
Description:Mus musculus RIKEN cDNA 1700092C10 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381469,171,818 - 69,171,878EPDNEW
RGD ID:15094465
Promoter ID:EPDNEWNC_M2387
Type:multiple initiation site
Name:1700092C10Rik_1
Description:RIKEN cDNA 1700092C10 gene [Source:MGISymbol;Acc:MGI:1920804]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381469,171,818 - 69,171,878EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000092499 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000172547 ENTREZGENE
MGD MGI:1920804 ENTREZGENE
NCBI Gene 73554 ENTREZGENE
PhenoGen 1700092C10Rik PhenoGen
RNAcentral URS000075EB2C RNACentral