4933402J10Rik (RIKEN cDNA 4933402J10 gene) - Rat Genome Database

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Gene: 4933402J10Rik (RIKEN cDNA 4933402J10 gene) Mus musculus
Analyze
Symbol: 4933402J10Rik
Name: RIKEN cDNA 4933402J10 gene
RGD ID: 1609804
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC71057
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39560,120,462 - 60,143,345 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl560,120,462 - 60,143,347 (-)EnsemblGRCm39 Ensembl
GRCm38559,963,119 - 59,986,002 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl559,963,119 - 59,986,004 (-)EnsemblGRCm38mm10GRCm38
Celera557,307,216 - 57,330,417 (-)NCBICelera
Cytogenetic Map5C2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in 4933402J10Rik
943 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53102427565024480Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53102427565024480Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53569446269694594Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53569446269694594Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53569446269694594Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53569446269694594Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53585456869854714Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53585456869854714Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3643342370433423Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53649448670494598Mouse
1300926Hpi2_mhepatic PMN infiltration 2 (mouse)Not determined53758148864806579Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53764377771643896Mouse
1300951Gbvq1_mgallstone bladder volume QTL 1 (mouse)Not determined53811168172111798Mouse
13464245Ahl12_mage related hearing loss, early onset 12 (mouse)53811168172111798Mouse
1301698Pcfm4_mperiosteal circumference and femur length 4 (mouse)Not determined54458584378585965Mouse
13207584Mwmlpt4_mMorris water maze latency to platform, training, 4 (mouse)54632260680322606Mouse
13207588Mwmlpa4_mMorris water maze latency to platform, all, 4 (mouse)54632260680322606Mouse
14746981Manh57_mmandible shape 57 (mouse)54716974281169742Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
4141473Lfnq1_mlung function QTL 1 (mouse)Not determined5441111064579648Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555388334100455525Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
13464248Ahl13_mage related hearing loss, early onset 13 (mouse)55564587489645995Mouse
10043962Obq27_mobesity QTL 27 (mouse)Not determined55628565590285655Mouse
10044005Ahl7_mage related hearing loss 7 (mouse)Not determined55833050292330641Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55960280193602980Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55960280193602980Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55960280193602980Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55960280193602980Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000197579
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl560,120,462 - 60,143,347 (-)Ensembl
GRCm38.p6 Ensembl559,963,119 - 59,986,004 (-)Ensembl
RefSeq Acc Id: ENSMUST00000198882
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl560,120,467 - 60,143,341 (-)Ensembl
GRCm38.p6 Ensembl559,963,124 - 59,985,998 (-)Ensembl
RefSeq Acc Id: NR_040682
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39560,120,462 - 60,143,345 (-)NCBI
GRCm38559,963,119 - 59,986,002 (-)ENTREZGENE
Celera557,307,216 - 57,330,417 (-)ENTREZGENE
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_040683
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39560,120,462 - 60,143,345 (-)NCBI
GRCm38559,963,119 - 59,986,002 (-)ENTREZGENE
Celera557,307,216 - 57,330,417 (-)ENTREZGENE
cM Map5 ENTREZGENE
Sequence:
Promoters
RGD ID:15092860
Promoter ID:EPDNEWNC_M770
Type:multiple initiation site
Name:4933402J10Rik_1
Description:RIKEN cDNA 4933402J10 gene [Source:MGISymbol;Acc:MGI:1918307]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38559,986,021 - 59,986,081EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000106013 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000197579 ENTREZGENE
  ENSMUST00000198882 ENTREZGENE
MGD MGI:1918307 ENTREZGENE
NCBI Gene 71057 ENTREZGENE
PhenoGen 4933402J10Rik PhenoGen
RNAcentral URS000075BCA4 RNACentral
  URS000075C84E RNACentral