2410012E07Rik (RIKEN cDNA 2410012E07 gene) - Rat Genome Database

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Gene: 2410012E07Rik (RIKEN cDNA 2410012E07 gene) Mus musculus
Analyze
Symbol: 2410012E07Rik
Name: RIKEN cDNA 2410012E07 gene
RGD ID: 1609744
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC73648; uncharacterized protein LOC73648
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391471,090,373 - 71,111,394 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1471,090,373 - 71,111,394 (+)EnsemblGRCm39 Ensembl
GRCm381470,852,933 - 70,873,954 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1470,852,933 - 70,873,954 (+)EnsemblGRCm38mm10GRCm38
Celera1468,398,738 - 68,422,055 (+)NCBICelera
Cytogenetic Map14D2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:18799693   PMID:24316575  


Genomics

Variants

.
Variants in 2410012E07Rik
632 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
14747006Mancz12_mmandible centroid size 12 (mouse)1470071977104071977Mouse
12880400Emlq2_memotional learning QTL 2 (mouse)147083763373337633Mouse
10054475Ossc3_mosteosarcoma susceptibility 3 (mouse)Not determined1470863768104863926Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000190896
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1471,090,373 - 71,111,394 (+)Ensembl
GRCm38.p6 Ensembl1470,852,933 - 70,873,954 (+)Ensembl
RefSeq Acc Id: NR_045939
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391471,090,373 - 71,111,394 (+)NCBI
GRCm381470,852,933 - 70,873,954 (+)ENTREZGENE
Celera1468,398,738 - 68,422,055 (+)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
Promoters
RGD ID:8682948
Promoter ID:EPDNEW_M19505
Type:single initiation site
Name:2410012E07Rik_1
Description:Mus musculus RIKEN cDNA 2410012E07 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381470,853,009 - 70,853,069EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000099528 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000190896 ENTREZGENE
MGD MGI:1920898 ENTREZGENE
NCBI Gene 73648 ENTREZGENE
PhenoGen 2410012E07Rik PhenoGen
RNAcentral URS000075DCBF RNACentral