4930480K15Rik (RIKEN cDNA 4930480K15 gene) - Rat Genome Database

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Gene: 4930480K15Rik (RIKEN cDNA 4930480K15 gene) Mus musculus
Analyze
Symbol: 4930480K15Rik
Name: RIKEN cDNA 4930480K15 gene
RGD ID: 1609641
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC78800
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391791,168,597 - 91,174,530 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1791,168,597 - 91,174,530 (+)EnsemblGRCm39 Ensembl
GRCm381790,861,169 - 90,867,102 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1790,861,169 - 90,867,102 (+)EnsemblGRCm38mm10GRCm38
Celera1795,258,597 - 95,264,538 (+)NCBICelera
Cytogenetic Map17E5NCBI
cM Map1760.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in 4930480K15Rik
190 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:85
Count of miRNA genes:82
Interacting mature miRNAs:85
Transcripts:ENSMUST00000162121
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142414Pregq4_mpregnancy QTL 4 (mouse)Not determined175753444793507179Mouse
4141040Hmtb9_mhemostasis and thrombosis rebleeding time 9 (mouse)Not determined5758908991589197Mouse
1301107Scc4_mcolon tumor susceptibility 4 (mouse)Not determined176230101095294699Mouse
11528551Sluc32_msusceptibility to lung cancer 32 (mouse)176230101095294699Mouse
1302017Aliq3_macute lung injury QTL 3 (mouse)Not determined176388554895294699Mouse
1301728Ffal1_mfree fatty acid level 1 (mouse)Not determined176521493895294699Mouse
14928308Manh82_mmandible shape 82 (mouse)176631524395294699Mouse
4142256Nilac12_mnicotine induced locomotor activity 12 (mouse)Not determined176894131995294699Mouse
11039500Ltpr7c_mLeishmania tropica response 7c (mouse)177070119895294699Mouse
11039498Ltpr7b_mLeishmania tropica response 7b (mouse)177070119895294699Mouse
11039499Ltpr7a_mLeishmania tropica response 7a (mouse)177070119895294699Mouse
11039514Ltpr7_mLeishmania tropica response 7 (mouse)177070119895294699Mouse
1357528Nhdlq3_mnon-HDL QTL 3 (mouse)Not determined177339513295294699Mouse
4141195Nilac11_mnicotine induced locomotor activity 11 (mouse)Not determined177339513295294699Mouse
4141697Hbnr3_mHeligmosomoides bakeri nematode resistance 3 (mouse)Not determined7410765193507179Mouse
14697708Stsl5_mSalmonella typhimurium susceptibility locus 5 (mouse)178080742991407428Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000162121
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1791,168,597 - 91,174,530 (+)Ensembl
GRCm38.p6 Ensembl1790,861,169 - 90,867,102 (+)Ensembl
RefSeq Acc Id: NR_045463
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391791,168,597 - 91,174,530 (+)NCBI
GRCm381790,861,169 - 90,867,102 (+)ENTREZGENE
Celera1795,258,597 - 95,264,538 (+)ENTREZGENE
cM Map17 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000090160 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000162121 ENTREZGENE
MGD MGI:1926050 ENTREZGENE
NCBI Gene 78800 ENTREZGENE
PhenoGen 4930480K15Rik PhenoGen
RNAcentral URS000075D597 RNACentral