Scaf4 (SR-related CTD-associated factor 4) - Rat Genome Database

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Gene: Scaf4 (SR-related CTD-associated factor 4) Mus musculus
Analyze
Symbol: Scaf4
Name: SR-related CTD-associated factor 4
RGD ID: 1609479
MGI Page MGI
Description: Predicted to enable RNA binding activity and RNA polymerase II C-terminal domain phosphoserine binding activity. Predicted to be involved in mRNA processing and negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Orthologous to human SCAF4 (SR-related CTD associated factor 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA517739; CTD-binding SR-like protein RA4; S; serine/arginine-rich splicing factor 15; Sfr; Sfrs15; splicing factor, arginine/serine-rich 15; SR-related and CTD-associated factor 4; Sra4; Srs; Srsf15
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391690,021,504 - 90,082,074 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1690,022,568 - 90,081,391 (-)EnsemblGRCm39 Ensembl
GRCm381690,228,950 - 90,286,140 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1690,225,680 - 90,284,503 (-)EnsemblGRCm38mm10GRCm38
MGSCv371690,229,384 - 90,284,670 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361690,229,384 - 90,284,670 (-)NCBIMGSCv36mm8
Celera1690,424,774 - 90,479,985 (-)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1651.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)
nucleus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12466854   PMID:12466855   PMID:12477932   PMID:12520002   PMID:14610273  
PMID:14681479   PMID:15368895   PMID:15782199   PMID:15840001   PMID:16033648   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:19521566   PMID:21873635   PMID:31146259  
PMID:34839354  


Genomics

Comparative Map Data
Scaf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391690,021,504 - 90,082,074 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1690,022,568 - 90,081,391 (-)EnsemblGRCm39 Ensembl
GRCm381690,228,950 - 90,286,140 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1690,225,680 - 90,284,503 (-)EnsemblGRCm38mm10GRCm38
MGSCv371690,229,384 - 90,284,670 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361690,229,384 - 90,284,670 (-)NCBIMGSCv36mm8
Celera1690,424,774 - 90,479,985 (-)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1651.57NCBI
SCAF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382131,671,000 - 31,732,118 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2131,671,000 - 31,732,118 (-)EnsemblGRCh38hg38GRCh38
GRCh372133,043,313 - 33,104,431 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362131,965,416 - 32,026,133 (-)NCBINCBI36Build 36hg18NCBI36
Celera2118,226,630 - 18,287,746 (-)NCBICelera
Cytogenetic Map21q22.11NCBI
HuRef2118,453,341 - 18,514,530 (-)NCBIHuRef
CHM1_12132,605,296 - 32,666,386 (-)NCBICHM1_1
T2T-CHM13v2.02130,038,984 - 30,100,110 (-)NCBIT2T-CHM13v2.0
Scaf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81142,951,254 - 43,007,293 (-)NCBIGRCr8
mRatBN7.21129,460,479 - 29,521,153 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1129,465,106 - 29,521,153 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1138,153,091 - 38,209,037 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01130,824,482 - 30,880,426 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01130,013,841 - 30,069,810 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01130,371,713 - 30,428,073 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1130,371,713 - 30,428,073 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01133,987,199 - 34,047,580 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41129,751,872 - 29,807,911 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11129,751,869 - 29,807,911 (+)NCBI
Celera1129,152,167 - 29,208,170 (-)NCBICelera
Cytogenetic Map11q11NCBI
Scaf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540731,270,035 - 31,303,823 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540731,269,673 - 31,303,823 (-)NCBIChiLan1.0ChiLan1.0
SCAF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22227,790,329 - 27,852,175 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12122,649,978 - 22,711,795 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02118,039,507 - 18,101,700 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12131,421,160 - 31,482,543 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2131,421,160 - 31,482,543 (-)Ensemblpanpan1.1panPan2
SCAF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13126,546,801 - 26,583,040 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3126,547,108 - 26,636,811 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3126,538,227 - 26,597,009 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03126,665,041 - 26,723,881 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3126,665,575 - 26,756,253 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13126,610,942 - 26,669,751 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03126,622,773 - 26,681,555 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03127,129,000 - 27,187,809 (-)NCBIUU_Cfam_GSD_1.0
Scaf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497127,123,792 - 27,168,322 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650010,307,835 - 10,342,588 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650010,307,868 - 10,342,952 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCAF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13195,333,260 - 195,396,204 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113195,335,178 - 195,396,246 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213205,632,094 - 205,690,676 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCAF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1260,397,173 - 60,459,295 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl260,397,233 - 60,458,553 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660712,938,854 - 3,002,480 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scaf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474520,040,770 - 20,097,835 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474520,040,416 - 20,097,764 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Scaf4
2068 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:177
Count of miRNA genes:109
Interacting mature miRNAs:128
Transcripts:ENSMUST00000039280, ENSMUST00000163419
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
1301125Sluc27_msusceptibility to lung cancer 27 (mouse)Not determined166160864495608764Mouse
4141113Tgq28_mtriglyceride QTL 28 (mouse)Not determined6298664696986646Mouse
1300928Etia_methanol induced activation (mouse)Not determined166331390797314016Mouse
1558740Bpq9_mblood pressure QTL 9 (mouse)Not determined166332733697327472Mouse
1302194Pgia10_mproteoglycan induced arthritis 10 (mouse)Not determined166860072298008968Mouse
1301032Tauph_mtau phosphorylation (mouse)Not determined166907613298008968Mouse
11049573Lmr18b_mleishmaniasis resistance 18b (mouse)166912761198008968Mouse
11049574Lmr18a_mleishmaniasis resistance 18a (mouse)166912761198008968Mouse
4142262Lmr18_mleishmaniasis resistance 18 (mouse)Not determined166912761198008968Mouse
11522753Cocia19_mcocaine-induced activity, QTL 19 (mouse)166925448298008968Mouse
1301598Renf2_mrenal failure 2 (mouse)Not determined167038025298008968Mouse

Markers in Region
RH136185  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381690,240,524 - 90,240,727UniSTSGRCm38
MGSCv371690,240,769 - 90,240,972UniSTSGRCm37
Celera1690,436,147 - 90,436,350UniSTS
Cytogenetic Map16C3.3UniSTS
Sfrs15  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16C3.3UniSTS
RH124471  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381690,229,304 - 90,229,396UniSTSGRCm38
MGSCv371690,229,549 - 90,229,641UniSTSGRCm37
Celera1690,424,939 - 90,425,031UniSTS
Cytogenetic Map16C3.3UniSTS
UniSTS:224371  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381690,283,323 - 90,283,503UniSTSGRCm38
MGSCv371690,283,568 - 90,283,748UniSTSGRCm37
Celera1690,478,921 - 90,479,101UniSTS
Cytogenetic Map16C3.3UniSTS
Sra4-pending  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381690,257,278 - 90,258,116UniSTSGRCm38
MGSCv371690,257,523 - 90,258,361UniSTSGRCm37
Celera1690,452,861 - 90,453,699UniSTS
Cytogenetic Map16C3.3UniSTS
cM MapUN UniSTS
cM Map1651.57UniSTS
cM Map16 UniSTS
AA517739  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16C3.3UniSTS
cM Map16 UniSTS
D11Wox13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381690,229,766 - 90,229,927UniSTSGRCm38
MGSCv371690,230,011 - 90,230,172UniSTSGRCm37
Celera1690,425,401 - 90,425,562UniSTS
Cytogenetic Map16C3.3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001346799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001417087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001417088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001417089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001417090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001417091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC139573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC041782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000039280   ⟹   ENSMUSP00000044472
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1690,025,943 - 90,081,313 (-)Ensembl
GRCm38.p6 Ensembl1690,229,055 - 90,284,425 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163419   ⟹   ENSMUSP00000132250
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1690,025,839 - 90,081,196 (-)Ensembl
GRCm38.p6 Ensembl1690,228,951 - 90,284,308 (-)Ensembl
RefSeq Acc Id: ENSMUST00000231443
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1690,039,226 - 90,039,958 (-)Ensembl
GRCm38.p6 Ensembl1690,242,338 - 90,243,070 (-)Ensembl
RefSeq Acc Id: ENSMUST00000231572
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1690,054,258 - 90,055,344 (-)Ensembl
GRCm38.p6 Ensembl1690,257,370 - 90,258,456 (-)Ensembl
RefSeq Acc Id: ENSMUST00000231594
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1690,026,928 - 90,044,104 (-)Ensembl
GRCm38.p6 Ensembl1690,230,040 - 90,247,216 (-)Ensembl
RefSeq Acc Id: ENSMUST00000231776
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1690,054,573 - 90,055,688 (-)Ensembl
GRCm38.p6 Ensembl1690,257,685 - 90,258,800 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232000
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1690,022,568 - 90,027,096 (-)Ensembl
GRCm38.p6 Ensembl1690,225,680 - 90,230,208 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232371   ⟹   ENSMUSP00000156174
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1690,025,845 - 90,081,391 (-)Ensembl
GRCm38.p6 Ensembl1690,228,957 - 90,284,503 (-)Ensembl
RefSeq Acc Id: NM_001346799   ⟹   NP_001333728
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391690,025,839 - 90,081,374 (-)NCBI
GRCm381690,228,951 - 90,284,486 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001358402   ⟹   NP_001345331
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391690,025,839 - 90,081,374 (-)NCBI
GRCm381690,228,951 - 90,284,503 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001417087   ⟹   NP_001404016
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391690,025,839 - 90,081,374 (-)NCBI
RefSeq Acc Id: NM_001417088   ⟹   NP_001404017
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391690,025,839 - 90,081,374 (-)NCBI
RefSeq Acc Id: NM_001417089   ⟹   NP_001404018
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391690,025,839 - 90,081,374 (-)NCBI
RefSeq Acc Id: NM_001417090   ⟹   NP_001404019
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391690,025,839 - 90,081,374 (-)NCBI
RefSeq Acc Id: NM_001417091   ⟹   NP_001404020
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391690,025,839 - 90,081,374 (-)NCBI
RefSeq Acc Id: NM_178923   ⟹   NP_849254
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391690,025,839 - 90,081,374 (-)NCBI
GRCm381690,228,951 - 90,284,503 (-)NCBI
MGSCv371690,229,384 - 90,284,670 (-)RGD
Celera1690,424,774 - 90,479,985 (-)RGD
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006523014   ⟹   XP_006523077
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391690,021,504 - 90,082,074 (-)NCBI
GRCm381690,228,950 - 90,284,486 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011246114   ⟹   XP_011244416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391690,021,504 - 90,082,074 (-)NCBI
GRCm381690,228,950 - 90,284,496 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017316972   ⟹   XP_017172461
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391690,021,504 - 90,054,125 (-)NCBI
GRCm381690,228,950 - 90,257,236 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_849254   ⟸   NM_178923
- Peptide Label: isoform 1
- UniProtKB: Q6PFF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006523077   ⟸   XM_006523014
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011244416   ⟸   XM_011246114
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017172461   ⟸   XM_017316972
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: NP_001345331   ⟸   NM_001358402
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001333728   ⟸   NM_001346799
- Peptide Label: isoform 2
- UniProtKB: Q6PFF0 (UniProtKB/Swiss-Prot),   Q69ZP8 (UniProtKB/Swiss-Prot),   A0A338P6Z6 (UniProtKB/Swiss-Prot),   Q8R1B3 (UniProtKB/Swiss-Prot),   Q7TSH6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000132250   ⟸   ENSMUST00000163419
RefSeq Acc Id: ENSMUSP00000156174   ⟸   ENSMUST00000232371
RefSeq Acc Id: ENSMUSP00000044472   ⟸   ENSMUST00000039280
RefSeq Acc Id: NP_001404018   ⟸   NM_001417089
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001404017   ⟸   NM_001417088
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001404020   ⟸   NM_001417091
- Peptide Label: isoform 8
RefSeq Acc Id: NP_001404019   ⟸   NM_001417090
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001404016   ⟸   NM_001417087
- Peptide Label: isoform 4
Protein Domains
CID   RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TSH6-F1-model_v2 AlphaFold Q7TSH6 1-1183 view protein structure

Promoters
RGD ID:6847339
Promoter ID:MM_ACW:21175
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   3T3L1_Day4,   Kidney
Transcripts:SFRS15.MSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361690,224,756 - 90,225,327 (-)MPROMDB
RGD ID:6847340
Promoter ID:MM_ACW:21176
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   Kidney
Transcripts:SFRS15.LSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361690,225,451 - 90,226,772 (-)MPROMDB
RGD ID:6847336
Promoter ID:MM_ACW:21178
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   ES_Cell
Transcripts:SFRS15.HSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361690,229,846 - 90,230,346 (-)MPROMDB
RGD ID:6827516
Promoter ID:MM_KWN:21647
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:UC007ZWA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361690,242,769 - 90,243,269 (-)MPROMDB
RGD ID:6827517
Promoter ID:MM_KWN:21648
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver
Transcripts:UC007ZWF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361690,260,399 - 90,260,899 (-)MPROMDB
RGD ID:13674394
Promoter ID:EPDNEW_M21346
Type:initiation region
Name:Scaf4_1
Description:Mus musculus SR-related CTD-associated factor 4 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381690,284,465 - 90,284,525EPDNEW
RGD ID:6827515
Promoter ID:MM_KWN:21649
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_178923,   UC007ZWC.1,   UC007ZWD.1,   UC007ZWE.1,   UC007ZWG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361690,284,499 - 90,284,999 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2146350 AgrOrtholog
Ensembl Genes ENSMUSG00000022983 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000039280 ENTREZGENE
  ENSMUST00000039280.9 UniProtKB/Swiss-Prot
  ENSMUST00000163419 ENTREZGENE
  ENSMUST00000163419.9 UniProtKB/Swiss-Prot
  ENSMUST00000232371 ENTREZGENE
  ENSMUST00000232371.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.70.330 UniProtKB/Swiss-Prot
InterPro CID_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENTH_VHS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
  SCAF4_RRM UniProtKB/Swiss-Prot
KEGG Report mmu:224432 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2146350 ENTREZGENE
NCBI Gene 224432 ENTREZGENE
PANTHER RNA PROCESSING PROTEIN LD23810P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SR-RELATED AND CTD-ASSOCIATED FACTOR 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CTD_bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_1 UniProtKB/Swiss-Prot
PhenoGen Scaf4 PhenoGen
PROSITE CID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM UniProtKB/Swiss-Prot
SMART RPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48464 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54928 UniProtKB/Swiss-Prot
UniProt A0A338P6Z6 ENTREZGENE
  Q69ZP8 ENTREZGENE
  Q6PFF0 ENTREZGENE
  Q7TSH6 ENTREZGENE
  Q8BXA9_MOUSE UniProtKB/TrEMBL
  Q8R1B3 ENTREZGENE
  SCAF4_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A0A338P6Z6 UniProtKB/Swiss-Prot
  Q69ZP8 UniProtKB/Swiss-Prot
  Q6PFF0 UniProtKB/Swiss-Prot
  Q8R1B3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Scaf4  SR-related CTD-associated factor 4  Sfrs15  splicing factor, arginine/serine-rich 15  Symbol and/or name change 5135510 APPROVED