A330033J07Rik (RIKEN cDNA A330033J07 gene) - Rat Genome Database

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Gene: A330033J07Rik (RIKEN cDNA A330033J07 gene) Mus musculus
Analyze
Symbol: A330033J07Rik
Name: RIKEN cDNA A330033J07 gene
RGD ID: 1609428
MGI Page MGI
Description: Is expressed in several structures, including heart; intestine; liver; lung; and metanephros.
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC320614
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391348,197,707 - 48,416,099 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1348,197,707 - 48,416,099 (-)EnsemblGRCm39 Ensembl
GRCm381348,044,231 - 48,262,623 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1348,044,231 - 48,262,623 (-)EnsemblGRCm38mm10GRCm38
MGSCv371348,139,600 - 48,358,332 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1349,132,736 - 49,351,648 (-)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1324.6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:29716997  


Genomics

Variants

.
Variants in A330033J07Rik
6004 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:240
Count of miRNA genes:194
Interacting mature miRNAs:207
Transcripts:ENSMUST00000180921, ENSMUST00000181053
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
1558898Hpi1_mhapatic PMN infiltration 1 (mouse)Not determined13441402553101640Mouse
1301880Hypt_mhypertension (mouse)Not determined131815679252156924Mouse
13463469Gssq1_mglomerulosclerosis severity QTL 1 (mouse)131906090853061050Mouse
12880423V25Dq7_mvitamin D inactive form serum level QTL 7 (mouse)131958398353583983Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132047761259821605Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
1357591Tesq1_mtestis weight QTL 1 (mouse)Not determined132061551255720517Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
10045618Heal17_mwound healing/regeneration 17 (mouse)Not determined132074693954747056Mouse
4142489Ath25_matherosclerosis 25 (mouse)Not determined2583652959836529Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132791846961918560Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132821044262210544Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132821737962217515Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132821737962217515Mouse
10755533Chol18_mcholesterol 18 (mouse)133096946764969467Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
12738427Lfibq24_mliver fibrosis QTL 24 (mouse)134425810752758667Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
26884396Humsd4_mhumerus midshaft diameter 4, 10 week (mouse)134785347673148119Mouse

Markers in Region
X75018  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381348,263,073 - 48,263,263UniSTSGRCm38
MGSCv371348,358,442 - 48,358,632UniSTSGRCm37
Celera1349,352,098 - 49,352,288UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic Map13BUniSTS
cM Map1331.0UniSTS
Whitehead_YAC13 UniSTS
RH144051  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381348,262,723 - 48,262,871UniSTSGRCm38
MGSCv371348,358,092 - 48,358,240UniSTSGRCm37
Celera1349,351,748 - 49,351,896UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic Map13BUniSTS
cM Map1331.0UniSTS
PMC133998P7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381348,261,498 - 48,262,308UniSTSGRCm38
MGSCv371348,356,867 - 48,357,677UniSTSGRCm37
Celera1349,350,452 - 49,351,333UniSTS
Cytogenetic Map13BUniSTS
Cytogenetic Map13A5UniSTS
cM Map1331.0UniSTS
Idb4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381348,261,492 - 48,262,969UniSTSGRCm38
MGSCv371348,356,861 - 48,358,338UniSTSGRCm37
Celera1349,350,446 - 49,351,994UniSTS
Cytogenetic Map13BUniSTS
Cytogenetic Map13A5UniSTS
cM Map1331.0UniSTS
Idb4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381348,261,694 - 48,262,310UniSTSGRCm38
MGSCv371348,357,063 - 48,357,679UniSTSGRCm37
Celera1349,350,719 - 49,351,335UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic Map13BUniSTS
cM Map1331.0UniSTS
Id4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381348,261,688 - 48,261,838UniSTSGRCm38
MGSCv371348,357,057 - 48,357,207UniSTSGRCm37
Celera1349,350,713 - 49,350,863UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic Map13BUniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000180921
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1348,197,707 - 48,416,099 (-)Ensembl
GRCm38.p6 Ensembl1348,044,231 - 48,262,623 (-)Ensembl
RefSeq Acc Id: NR_102303
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391348,197,707 - 48,416,099 (-)NCBI
GRCm381348,044,231 - 48,262,623 (-)NCBI
Celera1349,132,736 - 49,351,648 (-)NCBI
Sequence:
Promoters
RGD ID:8680264
Promoter ID:EPDNEW_M18162
Type:initiation region
Name:AK039372_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381348,262,597 - 48,262,657EPDNEW
RGD ID:8680266
Promoter ID:EPDNEW_M18163
Type:initiation region
Name:A330033J07Rik_1
Description:Mus musculus RIKEN cDNA A330033J07 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381348,262,630 - 48,262,690EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097622 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000180921 ENTREZGENE
MGD MGI:2444369 ENTREZGENE
NCBI Gene 320614 ENTREZGENE
PhenoGen A330033J07Rik PhenoGen
RNAcentral URS000075B761 RNACentral