4930517O19Rik (RIKEN cDNA 4930517O19 gene) - Rat Genome Database

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Gene: 4930517O19Rik (RIKEN cDNA 4930517O19 gene) Mus musculus
Analyze
Symbol: 4930517O19Rik
Name: RIKEN cDNA 4930517O19 gene
RGD ID: 1609176
MGI Page MGI
Description:
Type: gene (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914100,432,369 - 100,486,110 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14100,450,578 - 100,482,775 (+)EnsemblGRCm39 Ensembl
GRCm3814100,208,642 - 100,245,196 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14100,213,142 - 100,245,339 (+)EnsemblGRCm38mm10GRCm38
Celera1498,880,825 - 98,920,646 (+)NCBICelera
cM Map1450.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17967808  


Genomics

Variants

.
Variants in 4930517O19Rik
1966 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:133
Count of miRNA genes:129
Interacting mature miRNAs:132
Transcripts:ENSMUST00000137352, ENSMUST00000140320, ENSMUST00000145018
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
14747006Mancz12_mmandible centroid size 12 (mouse)1470071977104071977Mouse
10054475Ossc3_mosteosarcoma susceptibility 3 (mouse)Not determined1470863768104863926Mouse
1300551Lprm3_mlymphoproliferation modifier 3 (mouse)Not determined1471221224105221344Mouse
1301844Pgia29_mproteoglycan induced arthritis 29 (mouse)Not determined1474352296108352384Mouse
1558819Ossc2_mosteosarcoma susceptibility 2 (mouse)Not determined1474394976108395093Mouse
14928314Manh77_mmandible shape 77 (mouse)1476767790110767790Mouse
1558823Tbbmd6_mtotal body bone mineral density 6 (mouse)Not determined1477073696111073787Mouse
4142508Tgq25_mtriglyceride QTL 25 (mouse)Not determined85134068119134068Mouse
13524530Bodwtq11_mbody wweight QTL 11 (mouse)1487767629102538219Mouse
12792981Fbmd5_mfemoral bone mineral density 5, females only (mouse)1499838217125033054Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000140320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14100,450,578 - 100,482,775 (+)Ensembl
GRCm38.p6 Ensembl14100,213,142 - 100,245,339 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145018
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14100,450,625 - 100,482,257 (+)Ensembl
GRCm38.p6 Ensembl14100,213,189 - 100,244,821 (+)Ensembl
RefSeq Acc Id: XR_008604643
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914100,432,369 - 100,486,110 (+)NCBI
RefSeq Acc Id: XR_008604644
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914100,432,369 - 100,486,110 (+)NCBI
RefSeq Acc Id: XR_008604645
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914100,432,369 - 100,486,110 (+)NCBI
Protein Sequences
GenBank Protein BAB29988 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:8683114
Promoter ID:EPDNEW_M19588
Type:initiation region
Name:AK015818_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3814100,213,189 - 100,213,249EPDNEW
RGD ID:15094487
Promoter ID:EPDNEWNC_M2401
Type:multiple initiation site
Name:4930517O19Rik_1
Description:RIKEN cDNA 4930517O19 gene [Source:MGISymbol;Acc:MGI:1922325]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3814100,213,189 - 100,213,249EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000054391 Ensembl
MGD MGI:1922325 ENTREZGENE
NCBI Gene 75075 ENTREZGENE
PhenoGen 4930517O19Rik PhenoGen
UniProt Q9D540_MOUSE UniProtKB/TrEMBL