6530403H02Rik (RIKEN cDNA 6530403H02 gene) - Rat Genome Database

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Gene: 6530403H02Rik (RIKEN cDNA 6530403H02 gene) Mus musculus
Analyze
Symbol: 6530403H02Rik
Name: RIKEN cDNA 6530403H02 gene
RGD ID: 1608934
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC320739
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393120,247,983 - 120,680,381 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3120,397,758 - 120,680,412 (-)EnsemblGRCm39 Ensembl
GRCm383120,454,334 - 120,886,732 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3120,604,109 - 120,886,733 (-)EnsemblGRCm38mm10GRCm38
Celera3126,840,543 - 127,256,628 (-)NCBICelera
Cytogenetic Map3G1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in 6530403H02Rik
13590 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:306
Count of miRNA genes:263
Interacting mature miRNAs:277
Transcripts:ENSMUST00000182099, ENSMUST00000182124, ENSMUST00000183168, ENSMUST00000183276
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse
8655599Cia5c_mcollagen induced arthritis QTL 5c (mouse)Not determined3107376936125316237Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107376936147304689Mouse
1300619Cdcs1_mcytokine deficiency colitis susceptibility 1 (mouse)Not determined3109834882143835005Mouse
12910793Pwbwq7_mpost-weaning body weight QTL 7 (mouse)3110084357135715812Mouse
12910796Pwbwq6_mpost-weaning body weight QTL 6 (mouse)3110084357135715812Mouse
12910815Ogrq1_moverall growth rate QTL 1 (mouse)3110084357135715812Mouse
1301381Bomb1_mbone marrow pre-B 1 (mouse)Not determined3111133243145133417Mouse
1301100Bdt2_mbone density traits 2 (mouse)Not determined3114736617148736784Mouse
10043919Afpq8_mabdominal fat percent QTL 8 (mouse)Not determined3119057332153057456Mouse
1558868Ses9_msalmonella enteritidis susceptibility 9 (mouse)Not determined3119057332153057456Mouse
4141935Tgq15_mtriglyceride QTL 15 (mouse)Not determined119318586153318586Mouse
4142449Tgq14_mtriglyceride QTL 14 (mouse)Not determined119318586153318586Mouse
1302151Lprm2_mlymphoproliferation modifier 2 (mouse)Not determined3119778857153779044Mouse

Markers in Region
RH118266  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383120,725,905 - 120,726,094UniSTSGRCm38
MGSCv373120,428,823 - 120,429,012UniSTSGRCm37
Celera3127,113,328 - 127,113,517UniSTS
Whitehead/MRC_RH31390.85UniSTS
px-65a8  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7A1UniSTS
Cytogenetic Map8B1.2UniSTS
Cytogenetic Map1H2.3-H3UniSTS
Cytogenetic Map17B3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map16C3.3UniSTS
Cytogenetic Map3G1UniSTS
px-72g5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7CUniSTS
Cytogenetic Map3H2UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map12B1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map16C3.3UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic Map8B1.2UniSTS
Cytogenetic Map9A1UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map3BUniSTS
cM Map1354.0UniSTS
cM Map91.0UniSTS
cM Map316.4UniSTS
px-45f3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3G1UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map9E3.1UniSTS
cM Map316.4UniSTS
cM Map1354.0UniSTS
px-60g6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D1UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map17E2UniSTS
Cytogenetic Map10A4UniSTS
cM Map1354.0UniSTS
cM Map1740.0UniSTS
px-8b4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map17B3UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map17E2UniSTS
Cytogenetic Map3BUniSTS
cM Map1354.0UniSTS
cM Map1740.0UniSTS
px-24g4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7CUniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map3H2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map3F2.3UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map12B1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic Map16C3.3UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map9A1UniSTS
Cytogenetic Map17E2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map17CUniSTS
cM Map91.0UniSTS
cM Map316.4UniSTS
cM Map1740.0UniSTS
cM Map1354.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000182099
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3120,413,780 - 120,680,357 (-)Ensembl
GRCm38.p6 Ensembl3120,772,730 - 120,886,691 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182124
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3120,397,758 - 120,680,382 (-)Ensembl
GRCm38.p6 Ensembl3120,604,109 - 120,886,733 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183168
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3120,488,458 - 120,680,363 (-)Ensembl
GRCm38.p6 Ensembl3120,694,809 - 120,886,714 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183276
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3120,484,108 - 120,680,381 (-)Ensembl
GRCm38.p6 Ensembl3120,690,459 - 120,886,732 (-)Ensembl
RefSeq Acc Id: ENSMUST00000244165
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3120,678,873 - 120,680,412 (-)Ensembl
RefSeq Acc Id: ENSMUST00000244864
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3120,479,756 - 120,680,356 (-)Ensembl
RefSeq Acc Id: NR_130170
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393120,247,983 - 120,680,381 (-)NCBI
GRCm383120,454,334 - 120,886,732 (-)NCBI
Celera3126,840,543 - 127,256,628 (-)NCBI
Sequence:
Promoters
RGD ID:6882214
Promoter ID:EPDNEW_M4558
Type:initiation region
Name:6530403H02Rik_1
Description:Mus musculus RIKEN cDNA 6530403H02 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383120,886,741 - 120,886,801EPDNEW
RGD ID:15092649
Promoter ID:EPDNEWNC_M530
Type:initiation region
Name:6530403H02Rik_1
Description:RIKEN cDNA 6530403H02 gene [Source:MGISymbol;Acc:MGI:2444638]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383120,886,741 - 120,886,801EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000098097 Ensembl
MGD MGI:2444638 ENTREZGENE
NCBI Gene 320739 ENTREZGENE
PhenoGen 6530403H02Rik PhenoGen
RNAcentral URS00007E336F RNACentral