1700020M21Rik (RIKEN cDNA 1700020M21 gene) - Rat Genome Database

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Gene: 1700020M21Rik (RIKEN cDNA 1700020M21 gene) Mus musculus
Analyze
Symbol: 1700020M21Rik
Name: RIKEN cDNA 1700020M21 gene
RGD ID: 1608646
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC76402
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399120,742,840 - 120,744,316 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9120,742,840 - 120,744,318 (-)EnsemblGRCm39 Ensembl
GRCm389120,913,774 - 120,915,250 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9120,913,774 - 120,915,252 (-)EnsemblGRCm38mm10GRCm38
Celera9121,384,354 - 121,385,832 (-)NCBICelera
Cytogenetic Map9F4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in 1700020M21Rik
77 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989162124123162124Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse
12910770Splic1_mspleen iron content 1 (mouse)991291078124359700Mouse
12910772Lvic6_mliver iron content 6 (mouse)991291078124359700Mouse
12910773Splic3_mspleen iron content 3 (mouse)991291078124359700Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991518283124359700Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991518283124359700Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991518283124359700Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991518283124359700Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991518283124359700Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991518283124359700Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991560372124359700Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991560372124359700Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
1301484Bwq6_mbody weight (mouse)Not determined993591658124359700Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993591658124359700Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996746658124359700Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9100889929124359700Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9101829255124359700Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9101829255124359700Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103118511124359700Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103118511124359700Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103118511124359700Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000188320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9120,742,840 - 120,744,318 (-)Ensembl
GRCm38.p6 Ensembl9120,913,774 - 120,915,252 (-)Ensembl
RefSeq Acc Id: NR_040742
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399120,742,840 - 120,744,316 (-)NCBI
GRCm389120,913,774 - 120,915,250 (-)ENTREZGENE
Celera9121,384,354 - 121,385,832 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
Promoters
RGD ID:8671238
Promoter ID:EPDNEW_M13650
Type:initiation region
Name:1700020M21Rik_1
Description:Mus musculus RIKEN cDNA 1700020M21 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389120,915,184 - 120,915,244EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000100146 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000188320 ENTREZGENE
MGD MGI:1923652 ENTREZGENE
NCBI Gene 76402 ENTREZGENE
PhenoGen 1700020M21Rik PhenoGen
RNAcentral URS000075C143 RNACentral