Mir346 (microRNA 346) - Rat Genome Database

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Gene: Mir346 (microRNA 346) Mus musculus
Analyze
Symbol: Mir346
Name: microRNA 346
RGD ID: 1608207
MGI Page MGI
Description: Acts upstream of or within cellular response to amino acid stimulus. Is expressed in frontal bone; gut; pancreas; and parietal bone. Orthologous to human MIR346 (microRNA 346).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mir-346; Mirn; Mirn346; mmu-mir-3; mmu-mir-346
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391434,616,566 - 34,616,663 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1434,616,566 - 34,616,663 (+)EnsemblGRCm39 Ensembl
GRCm381434,894,609 - 34,894,706 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1434,894,609 - 34,894,706 (+)EnsemblGRCm38mm10GRCm38
MGSCv371435,707,795 - 35,707,892 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1431,153,100 - 31,153,197 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1420.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14691248   PMID:16381832   PMID:17369397   PMID:17936263   PMID:19727952   PMID:19780716   PMID:20215419   PMID:20413612   PMID:20548288   PMID:21037258   PMID:21267068   PMID:21822254  
PMID:25661065   PMID:31397024   PMID:32839904   PMID:36854759   PMID:37175724  


Genomics

Comparative Map Data
Mir346
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391434,616,566 - 34,616,663 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1434,616,566 - 34,616,663 (+)EnsemblGRCm39 Ensembl
GRCm381434,894,609 - 34,894,706 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1434,894,609 - 34,894,706 (+)EnsemblGRCm38mm10GRCm38
MGSCv371435,707,795 - 35,707,892 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1431,153,100 - 31,153,197 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1420.85NCBI
MIR346
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381086,264,694 - 86,264,788 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1086,264,694 - 86,264,788 (-)EnsemblGRCh38hg38GRCh38
GRCh371088,024,451 - 88,024,545 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361088,014,430 - 88,014,524 (-)NCBINCBI36Build 36hg18NCBI36
Celera1082,019,715 - 82,019,809 (-)NCBICelera
Cytogenetic Map10q23.2NCBI
HuRef1081,873,792 - 81,873,886 (-)NCBIHuRef
CHM1_11088,306,192 - 88,306,286 (-)NCBICHM1_1
T2T-CHM13v2.01087,145,254 - 87,145,348 (-)NCBIT2T-CHM13v2.0
Mir346
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81610,224,300 - 10,224,397 (+)NCBIGRCr8
mRatBN7.21610,218,118 - 10,218,215 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1610,218,118 - 10,218,215 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1610,232,429 - 10,232,526 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01611,377,138 - 11,377,235 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01610,227,474 - 10,227,571 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01611,250,054 - 11,250,151 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1611,250,054 - 11,250,151 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0169,574,933 - 9,575,030 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera165,002,049 - 5,002,146 (-)NCBICelera
Cytogenetic Map16p15NCBI
MIR346
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1434,073,335 - 34,073,429 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl434,073,335 - 34,073,429 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha434,063,133 - 34,063,227 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0434,404,379 - 34,404,473 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl434,404,379 - 34,404,473 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1434,277,307 - 34,277,401 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0434,447,229 - 34,447,323 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0434,951,838 - 34,951,932 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Mir346
2 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:55697
Count of gene targets:18164
Count of transcripts:36814
Interacting mature miRNAs:mmu-miR-346-3p, mmu-miR-346-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
14696688Rfq2_mrearing frequency QTL 2, males (mouse)143372195735721957Mouse
27226727Tibl21_mtibia length 21, 16 week (mouse)143412195752937457Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083547
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1434,616,566 - 34,616,663 (+)Ensembl
GRCm38.p6 Ensembl1434,894,609 - 34,894,706 (+)Ensembl
RefSeq Acc Id: NR_029774
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391434,616,566 - 34,616,663 (+)NCBI
GRCm381434,894,609 - 34,894,706 (+)ENTREZGENE
MGSCv371435,707,795 - 35,707,892 (+)RGD
Celera1431,153,100 - 31,153,197 (+)RGD
cM Map14 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3619362 AgrOrtholog
Ensembl Genes ENSMUSG00000065481 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083547 ENTREZGENE
MGD MGI:3619362 ENTREZGENE
miRBase MI0000634 ENTREZGENE
NCBI Gene 723847 ENTREZGENE
PhenoGen Mir346 PhenoGen
RNAcentral URS00002FAF0F RNACentral
  URS00004BDA6B RNACentral
  URS00006D2133 RNACentral