Mir380 (microRNA 380) - Rat Genome Database

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Gene: Mir380 (microRNA 380) Mus musculus
Analyze
Symbol: Mir380
Name: microRNA 380
RGD ID: 1608195
MGI Page MGI
Description: Involved in energy homeostasis. Acts upstream of or within cellular response to leukemia inhibitory factor. Orthologous to human MIR380 (microRNA 380).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mir-380; Mirn; Mirn380; mmu-mir-3; mmu-mir-380
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912109,678,237 - 109,678,297 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12109,678,237 - 109,678,297 (+)EnsemblGRCm39 Ensembl
GRCm3812109,711,803 - 109,711,863 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12109,711,803 - 109,711,863 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,950,013 - 110,950,073 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera12110,909,029 - 110,909,089 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:15310658   PMID:15538371   PMID:16381832   PMID:17369397   PMID:17604727   PMID:20215419   PMID:20413612   PMID:20439489   PMID:21037258   PMID:21267068   PMID:21822254   PMID:24906954  
PMID:25124681   PMID:26107383   PMID:34511037  


Genomics

Comparative Map Data
Mir380
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912109,678,237 - 109,678,297 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12109,678,237 - 109,678,297 (+)EnsemblGRCm39 Ensembl
GRCm3812109,711,803 - 109,711,863 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12109,711,803 - 109,711,863 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,950,013 - 110,950,073 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera12110,909,029 - 110,909,089 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.56NCBI
MIR380
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814101,025,017 - 101,025,077 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14101,025,017 - 101,025,077 (+)EnsemblGRCh38hg38GRCh38
GRCh3714101,491,354 - 101,491,414 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614100,561,106 - 100,561,166 (+)NCBINCBI36Build 36hg18NCBI36
Celera1481,547,386 - 81,547,446 (+)NCBICelera
Cytogenetic Map14q32.31NCBI
HuRef1481,674,837 - 81,674,897 (+)NCBIHuRef
CHM1_114101,429,490 - 101,429,550 (+)NCBICHM1_1
T2T-CHM13v2.01495,260,461 - 95,260,521 (+)NCBIT2T-CHM13v2.0

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:14683
Count of gene targets:6637
Count of transcripts:10513
Interacting mature miRNAs:mmu-miR-380-3p, mmu-miR-380-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288052874120092757Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288052874120092757Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288308354120092757Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289664071120092757Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289939031120092757Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290308268120092757Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291222515120092757Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292750025120092757Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292750025120092757Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292936097120092757Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293264461120092757Mouse
11039526Ccc1_mcolitis susceptibility in the Collaborative Cross 1 (mouse)1293528334111028223Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294146064120092757Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296860337120092757Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296860337120092757Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102024665120092757Mouse
4141297Plyid_mPolymeric IgA dominance (mouse)Not determined109183385115885122Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000199984
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12109,678,237 - 109,678,297 (+)Ensembl
GRCm38.p6 Ensembl12109,711,803 - 109,711,863 (+)Ensembl
RefSeq Acc Id: NR_029881
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912109,678,237 - 109,678,297 (+)NCBI
GRCm3812109,711,803 - 109,711,863 (+)ENTREZGENE
MGSCv3712110,950,013 - 110,950,073 (+)RGD
Celera12110,909,029 - 110,909,089 (+)RGD
cM Map12 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3619389 AgrOrtholog
Ensembl Genes ENSMUSG00000104582 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000199984 ENTREZGENE
MGD MGI:3619389 ENTREZGENE
miRBase MI0000797 ENTREZGENE
NCBI Gene 723859 ENTREZGENE
PhenoGen Mir380 PhenoGen
RNAcentral URS00002E7823 RNACentral
  URS0000310E32 RNACentral
  URS000075ED08 RNACentral