Mir487b (microRNA 487b) - Rat Genome Database

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Gene: Mir487b (microRNA 487b) Mus musculus
Analyze
Symbol: Mir487b
Name: microRNA 487b
RGD ID: 1607582
MGI Page MGI
Description: Involved in energy homeostasis. Acts upstream of or within cellular response to phenylalanine; long-term synaptic potentiation; and sensory perception of sound. Orthologous to human MIR487B (microRNA 487b).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mir-487b; Mirn4; Mirn487b
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912109,693,767 - 109,693,848 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12109,693,767 - 109,693,848 (+)EnsemblGRCm39 Ensembl
GRCm3812109,727,333 - 109,727,414 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12109,727,333 - 109,727,414 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,965,543 - 110,965,624 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera12110,924,563 - 110,924,644 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16274478   PMID:16381832   PMID:17604727   PMID:20215419   PMID:20413612   PMID:21037258   PMID:21267068   PMID:23646144   PMID:25124681   PMID:25858512   PMID:25925429   PMID:26107383  
PMID:26822703   PMID:26936882   PMID:27545879   PMID:29284691   PMID:30556842   PMID:30978699  


Genomics

Comparative Map Data
Mir487b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912109,693,767 - 109,693,848 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12109,693,767 - 109,693,848 (+)EnsemblGRCm39 Ensembl
GRCm3812109,727,333 - 109,727,414 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12109,727,333 - 109,727,414 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,965,543 - 110,965,624 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera12110,924,563 - 110,924,644 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.56NCBI
MIR487B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814101,046,455 - 101,046,538 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14101,046,455 - 101,046,538 (+)EnsemblGRCh38hg38GRCh38
GRCh3714101,512,792 - 101,512,875 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614100,582,544 - 100,582,627 (+)NCBINCBI36Build 36hg18NCBI36
Celera1481,568,849 - 81,568,932 (+)NCBICelera
Cytogenetic Map14q32.31NCBI
HuRef1481,696,158 - 81,696,241 (+)NCBIHuRef
CHM1_114101,451,814 - 101,451,897 (+)NCBICHM1_1
T2T-CHM13v2.01495,281,832 - 95,281,915 (+)NCBIT2T-CHM13v2.0
Mir487b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86134,562,890 - 134,562,971 (+)NCBIGRCr8
mRatBN7.26128,741,485 - 128,741,566 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6128,741,485 - 128,741,566 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6128,920,724 - 128,920,805 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06129,216,556 - 129,216,637 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06128,578,179 - 128,578,260 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06133,877,124 - 133,877,205 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6133,877,124 - 133,877,205 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06143,039,481 - 143,039,562 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera6126,325,864 - 126,325,945 (+)NCBICelera
Cytogenetic Map6q32NCBI
MIR487B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1869,275,496 - 69,275,553 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl869,275,473 - 69,275,576 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha868,793,643 - 68,793,700 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0869,557,144 - 69,557,201 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1869,220,689 - 69,220,746 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0869,286,784 - 69,286,841 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0869,684,783 - 69,684,840 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Mir487b
3 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:5602
Count of gene targets:3537
Count of transcripts:5059
Interacting mature miRNAs:mmu-miR-487b-3p, mmu-miR-487b-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288052874120092757Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288052874120092757Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288308354120092757Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289664071120092757Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289939031120092757Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290308268120092757Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291222515120092757Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292750025120092757Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292750025120092757Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292936097120092757Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293264461120092757Mouse
11039526Ccc1_mcolitis susceptibility in the Collaborative Cross 1 (mouse)1293528334111028223Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294146064120092757Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296860337120092757Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296860337120092757Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102024665120092757Mouse
4141297Plyid_mPolymeric IgA dominance (mouse)Not determined109183385115885122Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000102265
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12109,693,767 - 109,693,848 (+)Ensembl
GRCm38.p6 Ensembl12109,727,333 - 109,727,414 (+)Ensembl
RefSeq Acc Id: NR_030271
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912109,693,767 - 109,693,848 (+)NCBI
GRCm3812109,727,333 - 109,727,414 (+)ENTREZGENE
MGSCv3712110,965,543 - 110,965,624 (+)RGD
Celera12110,924,563 - 110,924,644 (+)RGD
cM Map12 ENTREZGENE
Sequence:
Promoters
RGD ID:8679266
Promoter ID:EPDNEW_M17664
Type:single initiation site
Name:Mir487b_1
Description:Mus musculus microRNA 487b , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3812109,727,357 - 109,727,417EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3619424 AgrOrtholog
Ensembl Genes ENSMUSG00000076219 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000102265 ENTREZGENE
MGD MGI:3619424 ENTREZGENE
miRBase MI0003534 ENTREZGENE
NCBI Gene 723940 ENTREZGENE
PhenoGen Mir487b PhenoGen
RNAcentral URS00000F0AF5 RNACentral
  URS000015B295 RNACentral
  URS000075EB6F RNACentral