1700041M19Rik (RIKEN cDNA 1700041M19 gene)

Gene: 1700041M19Rik (RIKEN cDNA 1700041M19 gene) Mus musculus

Analyze

Symbol:

1700041M19Rik

Name:

RIKEN cDNA 1700041M19 gene

RGD ID:

1607378

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

PREDICTED

Previously known as:

hypothetical protein LOC76601

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	76,801,116 - 76,807,769 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	76,616,471 - 76,807,785 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	77,004,228 - 77,010,881 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	76,819,583 - 77,010,897 (-)	Ensembl	GRCm38		mm10	GRCm38
Celera	16	77,228,376 - 77,238,405 (-)	NCBI		Celera
Cytogenetic Map	16	C3.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073	PMID:24316575

Genomics

Variants

Variants in 1700041M19Rik
202 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
26884376	Skwq4_m	skull length QTL 4, 5 week (mouse)					16	8417864	90896888	Mouse
1357517	Bwtn1_m	body weight at necropsy 1 (mouse)			Not determined		16	20019329	85600826	Mouse
1302096	Aod1a_m	autoimmune ovarian dysgenesis 1a (mouse)			Not determined		16	35446643	92573008	Mouse
26884416	Bzwq5_m	bi-zygomatic width QTL 5, 5 week (mouse)					16	37320362	84696888	Mouse
11522747	Eae41_m	experimental allergic encephalomyelitis susceptibility 41 (mouse)					16	40399134	78015472	Mouse
1357778	Diobq_m	diet-induced obesity QTL (mouse)			Not determined		16	42197817	82331174	Mouse
4141212	Imraq3_m	immune response to AAV2 QTL 3 (mouse)			Not determined		16	44383350	78383506	Mouse
1301719	Remslp3_m	rapid eye movement sleep 3 (mouse)			Not determined		16	44383350	78383506	Mouse
14928310	Manh80_m	mandible shape 80 (mouse)					16	48219841	82219841	Mouse
1301394	Eae11_m	susceptibility to experimental allergic encephalomyelitis 11 (mouse)			Not determined		16	53561891	87562035	Mouse
1301364	Lith14_m	lithogenic gene 14 (mouse)			Not determined		16	55661846	89661961	Mouse
1301125	Sluc27_m	susceptibility to lung cancer 27 (mouse)			Not determined		16	61608644	95608764	Mouse
4141113	Tgq28_m	triglyceride QTL 28 (mouse)			Not determined			62986646	96986646	Mouse
1300928	Etia_m	ethanol induced activation (mouse)			Not determined		16	63313907	97314016	Mouse
1558740	Bpq9_m	blood pressure QTL 9 (mouse)			Not determined		16	63327336	97327472	Mouse
1302194	Pgia10_m	proteoglycan induced arthritis 10 (mouse)			Not determined		16	68600722	98008968	Mouse
1301032	Tauph_m	tau phosphorylation (mouse)			Not determined		16	69076132	98008968	Mouse
11049573	Lmr18b_m	leishmaniasis resistance 18b (mouse)					16	69127611	98008968	Mouse
11049574	Lmr18a_m	leishmaniasis resistance 18a (mouse)					16	69127611	98008968	Mouse
4142262	Lmr18_m	leishmaniasis resistance 18 (mouse)			Not determined		16	69127611	98008968	Mouse
11522753	Cocia19_m	cocaine-induced activity, QTL 19 (mouse)					16	69254482	98008968	Mouse
1301598	Renf2_m	renal failure 2 (mouse)			Not determined		16	70380252	98008968	Mouse
10412076	Pod_m	plasticity of ocular dominance (mouse)			Not determined		16	73544845	84350326	Mouse
12880403	Sefq1_m	stress effect QTL 1 (mouse)					16	74696643	78896643	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_040573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC116324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK006678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK077115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000190317

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	76,803,947 - 76,807,769 (-)	Ensembl
GRCm38.p6 Ensembl	16	77,007,059 - 77,010,881 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000190908

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	76,801,116 - 76,807,763 (-)	Ensembl
GRCm38.p6 Ensembl	16	77,004,228 - 77,010,875 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000207519

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	76,631,278 - 76,686,169 (-)	Ensembl
GRCm38.p6 Ensembl	16	76,834,390 - 76,889,281 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000207924

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	76,782,886 - 76,807,767 (-)	Ensembl
GRCm38.p6 Ensembl	16	76,985,998 - 77,010,879 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000208105

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	76,616,471 - 76,807,785 (-)	Ensembl
GRCm38.p6 Ensembl	16	76,819,583 - 77,010,897 (-)	Ensembl

RefSeq Acc Id:

NR_040573

RefSeq Status:

PREDICTED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	76,801,116 - 76,807,769 (-)	NCBI
GRCm38	16	77,004,228 - 77,010,881 (-)	ENTREZGENE
Celera	16	77,228,376 - 77,238,405 (-)	ENTREZGENE
cM Map	16		ENTREZGENE

Sequence:

show sequence

ATACTCATAGATGAGGAGCCATCAGAAGAGTCCAGCTAACACAGCTTAGGCCTATTTCATCATC
CCACCAAACAAGAAGATAGCCTGCTTCTCGCTTGACAGATCAAGGAAGGAGGAGGTGGAGGAGA
TGACAGAACAAGATCTACTGAAAAGACATCCATGACCTGGTGGCAGGTGCCCAAGCCATGTGCT
CCCAATACCCACAACTGGATTCTTTTTGCTGAAGAGAGAAAAGACATCCATGACCTGGTGGCAG
GTGCCCAAGCCATGTGCTCCCAATACCCACAACTAGATTCTTTTTGCTGAAGAGACCTATGATG
AACACAACAAAATCATAGGAATCCAGGACTCCCCACTTGAAGGATACTAAACTAGGATGGAAAT
TACCTCTACACCCCGATTGCATCTCCACTATCCCCGGCCCATTCCTCTGCTTTCCTTTTTGCAA
CACAGAGGTGATAGCCTACCATGGAAGGGAAGCCATGACAGAATTGACATTGCAGTGGGGAGTC
CAGGCTGCTGGAACCTGAGAATCGAAATCCCACAAGCCTATGTTCAGCTACCTGCTTCTGCCAC
CAATTTCTCATCTTCAAAAGGCTCCATAAACGCCCAAAACAGTTCAAAGCAACTAAGGATCAAC
TGATGAAACATTTGTCCTTATGGTGGATATCCCATGACAAAAAAATTTATATTAACAAGACAAC
AGTTTTACAAGTTGGTGGTTGTGACACTGTTGGGTTTTGACTTTAAAGTAGGGTGTTACTATAG
CCCAGACTGGTCTTGAATACACAGTGTAGCCCAGCATAGGCTGACCTGGAAGTCATGGAAGTCC
TCCTGCCACCTCTTTTCAATTGTTGGAACTGTATGTGTAAATGTTGAAATTATAAGCACTATGC
TTGGCTTAAGACAACCTTCATTATCTCACATTCCCTTCCCTGATTCTGTCATAACTTGTATTGC
CACACTCCACCCCAAAAGACCCATCTCCTTACCTGTTCCCAGATCTAAATGCTGGACGAGCAGC
AATGATATGGATCAGTTCACACCAGACACACTAGATGATTATATTCTCCTAATTGTTGGCACTA
TCTTTCCCAAGTACCTAATTAAATATGGTTTTCCTCTTGTC

hide sequence

Promoters

RGD ID:

13674250

Promoter ID:

EPDNEW_M21274

Type:

multiple initiation site

Name:

1700041M19Rik_1

Description:

Mus musculus RIKEN cDNA 1700041M19 gene , long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	16	77,010,875 - 77,010,935	EPDNEW

RGD ID:

15094711

Promoter ID:

EPDNEWNC_M2620

Type:

single initiation site

Name:

1700041M19Rik_1

Description:

RIKEN cDNA 1700041M19 gene [Source:MGISymbol;Acc:MGI:1923851]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	16	77,010,875 - 77,010,935	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000100857	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000190908	ENTREZGENE
MGD	MGI:1923851	ENTREZGENE
NCBI Gene	76601	ENTREZGENE
PhenoGen	1700041M19Rik	PhenoGen
RNAcentral	URS000075BAE7	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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