1700099I09Rik (RIKEN cDNA 1700099I09 gene) - Rat Genome Database

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Gene: 1700099I09Rik (RIKEN cDNA 1700099I09 gene) Mus musculus
Analyze
Symbol: 1700099I09Rik
Name: RIKEN cDNA 1700099I09 gene
RGD ID: 1607366
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC76624
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913102,896,763 - 102,898,404 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13102,896,763 - 102,898,404 (+)EnsemblGRCm39 Ensembl
GRCm3813102,760,255 - 102,761,896 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13102,760,255 - 102,761,896 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713103,550,335 - 103,551,976 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera13106,350,345 - 106,352,016 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1354.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in 1700099I09Rik
71 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:106
Count of miRNA genes:72
Interacting mature miRNAs:76
Transcripts:ENSMUST00000167834, ENSMUST00000171722
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined76132600112431103Mouse
12880414V125Dq10_mvitamin D active form serum level QTL 10 (mouse)1378036508112036508Mouse
10043997Bw40_mbody weight QTL 40 (mouse)Not determined1479239045113239162Mouse
10045623Heal18_mwound healing regeneration 18 (mouse)Not determined1379239045113239162Mouse
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382739968116740106Mouse
4142465Pbwg17_mpostnatal body weight growth 17 (mouse)Not determined1383876060117876256Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
4141728Egaq4_mearly growth adjusted QTL 4 (mouse)Not determined87901985112431103Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
14746974Manh75_mmandible shape 75 (mouse)1399386647120883175Mouse
4141102Sod1m_msuperoxide dismutase 1, soluble, modifier (mouse)Not determined99739968110699911Mouse
12879496Fexq2_mfear expression QTL 2 (mouse)13100741519120883175Mouse
13824989Pbsq1_mpercent broken sperm QTL 1 (mouse)13102136508112136534Mouse
4142400Tgq24_mtriglyceride QTL 24 (mouse)Not determined102602630120883175Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000167834
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13102,896,778 - 102,898,370 (+)Ensembl
GRCm38.p6 Ensembl13102,760,270 - 102,761,862 (+)Ensembl
RefSeq Acc Id: ENSMUST00000171722
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13102,896,763 - 102,898,404 (+)Ensembl
GRCm38.p6 Ensembl13102,760,255 - 102,761,896 (+)Ensembl
RefSeq Acc Id: NR_130171
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913102,896,763 - 102,898,404 (+)NCBI
GRCm3813102,760,255 - 102,761,896 (+)NCBI
Celera13106,350,345 - 106,352,016 (+)NCBI
Sequence:
RefSeq Acc Id: NR_130318
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913102,896,763 - 102,898,404 (+)NCBI
GRCm3813102,760,255 - 102,761,896 (+)NCBI
Celera13106,350,345 - 106,352,016 (+)NCBI
Sequence:
Promoters
RGD ID:8681202
Promoter ID:EPDNEW_M18632
Type:multiple initiation site
Name:1700099I09Rik_1
Description:Mus musculus RIKEN cDNA 1700099I09 gene , transcript variant2, long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3813102,760,262 - 102,760,322EPDNEW
RGD ID:15094376
Promoter ID:EPDNEWNC_M2270
Type:single initiation site
Name:1700099I09Rik_1
Description:RIKEN cDNA 1700099I09 gene [Source:MGISymbol;Acc:MGI:1923874]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3813102,760,262 - 102,760,322EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000091906 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000167834 ENTREZGENE
  ENSMUST00000171722 ENTREZGENE
MGD MGI:1923874 ENTREZGENE
NCBI Gene 76624 ENTREZGENE
PhenoGen 1700099I09Rik PhenoGen
RNAcentral URS000076CD7B RNACentral
  URS00007E45C9 RNACentral