1700034H15Rik (RIKEN cDNA 1700034H15 gene) - Rat Genome Database

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Gene: 1700034H15Rik (RIKEN cDNA 1700034H15 gene) Mus musculus
Analyze
Symbol: 1700034H15Rik
Name: RIKEN cDNA 1700034H15 gene
RGD ID: 1607268
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: 4930557M11Rik; BB016121
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391191,626,184 - 191,639,639 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1191,618,242 - 191,639,639 (-)EnsemblGRCm39 Ensembl
GRCm381191,894,072 - 191,907,527 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1191,886,130 - 191,907,527 (-)EnsemblGRCm38mm10GRCm38
MGSCv371193,717,951 - 193,731,406 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361193,714,109 - 193,723,008 (-)NCBIMGSCv36mm8
Celera1198,843,750 - 198,857,219 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map196.99NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17062627   PMID:24316575  


Genomics

Variants

.
Variants in 1700034H15Rik
391 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2374
Count of miRNA genes:849
Interacting mature miRNAs:1134
Transcripts:ENSMUST00000069573, ENSMUST00000139827, ENSMUST00000140401, ENSMUST00000145050, ENSMUST00000154116
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
1300727Mptp1_mMPTP sensitivity 1 (mouse)Not determined1171632048192681050Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1171983110195154279Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172303451195154279Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172303451195154279Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172532197195154279Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172632197195154279Mouse
1302023Orch4_mautoimmune orchitis resistance 4 (mouse)Not determined1175211318195154279Mouse
11532690Sluc37_msusceptibility to lung cancer 37 (mouse)1175468817194111528Mouse
1357692Axtq1_manxiety QTL 1 (mouse)Not determined1180832317191851043Mouse
1357620Aaj1_manxiety in A/J 1 (mouse)Not determined1180832317191851043Mouse
14700797Mencq2_mmeniscus calcification QTL 2 (mouse)1191583112192212308Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000069573
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1191,632,082 - 191,639,639 (-)Ensembl
GRCm38.p6 Ensembl1191,899,970 - 191,907,527 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1191,626,184 - 191,639,631 (-)Ensembl
GRCm38.p6 Ensembl1191,894,072 - 191,907,519 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140401
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1191,622,345 - 191,631,368 (-)Ensembl
GRCm38.p6 Ensembl1191,890,233 - 191,899,256 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145050
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1191,622,534 - 191,633,833 (-)Ensembl
GRCm38.p6 Ensembl1191,890,422 - 191,901,721 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1191,622,343 - 191,631,241 (-)Ensembl
GRCm38.p6 Ensembl1191,890,231 - 191,899,129 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190327
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1191,618,242 - 191,632,998 (-)Ensembl
GRCm38.p6 Ensembl1191,886,130 - 191,900,886 (-)Ensembl
RefSeq Acc Id: NR_030669
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391191,626,184 - 191,639,639 (-)NCBI
GRCm381191,894,072 - 191,907,527 (-)NCBI
Celera1198,843,750 - 198,857,219 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein BAC31002 (Get FASTA)   NCBI Sequence Viewer  
  BAE23329 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:6876126
Promoter ID:EPDNEW_M1514
Type:multiple initiation site
Name:1700034H15Rik_1
Description:Mus musculus RIKEN cDNA 1700034H15 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381191,907,596 - 191,907,656EPDNEW
RGD ID:6817313
Promoter ID:MM_KWN:3319
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000047476,   UC007ECZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361193,722,986 - 193,724,087 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000055833 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000139827 ENTREZGENE
MGD MGI:1921515 ENTREZGENE
NCBI Gene 98736 ENTREZGENE
PhenoGen 1700034H15Rik PhenoGen
RNAcentral URS0000759988 RNACentral
UniProt Q8BY81_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-09-17 1700034H15Rik  RIKEN cDNA 1700034H15 gene  4930557M11Rik  RIKEN cDNA 4930557M11 gene  Symbol and/or name change 5135510 APPROVED