Lamb3 (laminin, beta 3) - Rat Genome Database

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Gene: Lamb3 (laminin, beta 3) Mus musculus
Analyze
Symbol: Lamb3
Name: laminin, beta 3
RGD ID: 1558574
MGI Page MGI
Description: Predicted to be an extracellular matrix structural constituent. Acts upstream of or within brown fat cell differentiation. Located in basement membrane. Part of laminin-5 complex. Is expressed in several structures, including alimentary system; brain; genitourinary system; integumental system; and respiratory system. Used to study junctional epidermolysis bullosa Herlitz type and junctional epidermolysis bullosa non-Herlitz type. Human ortholog(s) of this gene implicated in amelogenesis imperfecta type 1A; junctional epidermolysis bullosa; and lung small cell carcinoma. Orthologous to human LAMB3 (laminin subunit beta 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: epiligrin subunit bata; kalinin B1 chain; kalinin subunit beta; laminin subunit beta-3; laminin-5 subunit beta; nicein subunit beta; nicein, 125kD; nicein, 125kDa
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391192,976,661 - 193,026,186 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1192,890,007 - 193,026,186 (+)EnsemblGRCm39 Ensembl
GRCm381193,294,353 - 193,343,878 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1193,207,699 - 193,343,878 (+)EnsemblGRCm38mm10GRCm38
MGSCv371195,128,188 - 195,170,072 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361195,002,753 - 195,044,602 (+)NCBIMGSCv36mm8
Celera1200,179,164 - 200,221,182 (+)NCBICelera
Cytogenetic Map1H6NCBI
cM Map197.71NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
1-octadec-9-enoylglycero-3-phosphate  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-dichloroaniline  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP)
6-propyl-2-thiouracil  (ISO)
6alpha-methylprednisolone  (ISO)
8-Br-cAMP  (ISO)
acetamide  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (EXP)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-naphthoflavone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
butan-1-ol  (ISO)
C60 fullerene  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
carmustine  (ISO)
cefaloridine  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
choline  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
D-glucose  (EXP)
dexamethasone  (EXP)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
dichloroacetic acid  (EXP)
diethylstilbestrol  (EXP,ISO)
diuron  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethanol  (ISO)
ethylparaben  (ISO)
fipronil  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
furan  (ISO)
genistein  (EXP)
gentamycin  (ISO)
glucose  (EXP)
hydrogen peroxide  (ISO)
inulin  (EXP)
ketoconazole  (ISO)
L-methionine  (EXP)
lamivudine  (ISO)
lysophosphatidylcholine  (ISO)
methotrexate  (ISO)
methylseleninic acid  (ISO)
N-ethyl-N-nitrosourea  (EXP)
nickel sulfate  (ISO)
ozone  (EXP,ISO)
palbociclib  (ISO)
paracetamol  (EXP,ISO)
pentane-2,3-dione  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
pirinixic acid  (EXP)
piroxicam  (ISO)
potassium chromate  (ISO)
potassium dichromate  (EXP)
prednisolone  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sodium aurothiomalate  (ISO)
sodium dichromate  (ISO)
sphingosine 1-phosphate  (ISO)
sulforaphane  (ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
tetrathiomolybdate(2-)  (ISO)
titanium dioxide  (EXP)
triazines  (EXP)
trichloroethene  (EXP)
triclosan  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
zidovudine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Differential expression of the LAMB3 and LAMC2 genes between small cell and non-small cell lung carcinomas. Manda R, etal., Biochem Biophys Res Commun. 2000 Aug 28;275(2):440-5. doi: 10.1006/bbrc.2000.3331.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. A homozygous nonsense mutation in the beta 3 chain gene of laminin 5 (LAMB3) in Herlitz junctional epidermolysis bullosa. Pulkkinen L, etal., Genomics. 1994 Nov 15;24(2):357-60.
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Epigenetic inactivation of laminin-5-encoding genes in lung cancers. Sathyanarayana UG, etal., Clin Cancer Res. 2003 Jul;9(7):2665-72.
Additional References at PubMed
PMID:7898049   PMID:8012114   PMID:8081888   PMID:8113417   PMID:8707838   PMID:8833897   PMID:8918877   PMID:9004048   PMID:9019243   PMID:9034910   PMID:9264260   PMID:9271670  
PMID:9396756   PMID:9489770   PMID:9506922   PMID:10349636   PMID:10651091   PMID:10853832   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12533516   PMID:15733672   PMID:15895400  
PMID:16141072   PMID:16141073   PMID:16165127   PMID:16537572   PMID:16602821   PMID:16728390   PMID:17601529   PMID:18492766   PMID:18757743   PMID:19795413   PMID:21267068   PMID:21524702  
PMID:21677750   PMID:21873635   PMID:22159717   PMID:22613833   PMID:22911573   PMID:23041440   PMID:23321329   PMID:23472759   PMID:23529140   PMID:24194600   PMID:24583261   PMID:24952961  
PMID:25350318   PMID:27068110   PMID:27626380   PMID:27653694   PMID:27856617   PMID:28604778   PMID:29141987   PMID:32008745   PMID:32325033   PMID:32674056   PMID:34653670   PMID:36347239  
PMID:38102338  


Genomics

Comparative Map Data
Lamb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391192,976,661 - 193,026,186 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1192,890,007 - 193,026,186 (+)EnsemblGRCm39 Ensembl
GRCm381193,294,353 - 193,343,878 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1193,207,699 - 193,343,878 (+)EnsemblGRCm38mm10GRCm38
MGSCv371195,128,188 - 195,170,072 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361195,002,753 - 195,044,602 (+)NCBIMGSCv36mm8
Celera1200,179,164 - 200,221,182 (+)NCBICelera
Cytogenetic Map1H6NCBI
cM Map197.71NCBI
LAMB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381209,614,870 - 209,652,425 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1209,614,870 - 209,652,425 (-)EnsemblGRCh38hg38GRCh38
GRCh371209,788,215 - 209,825,770 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361207,854,838 - 207,892,443 (-)NCBINCBI36Build 36hg18NCBI36
Build 341206,176,639 - 206,214,152NCBI
Celera1183,019,124 - 183,056,711 (-)NCBICelera
Cytogenetic Map1q32.2NCBI
HuRef1180,463,503 - 180,501,095 (-)NCBIHuRef
CHM1_11211,060,621 - 211,098,219 (-)NCBICHM1_1
T2T-CHM13v2.01208,861,637 - 208,900,810 (-)NCBIT2T-CHM13v2.0
Lamb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813107,362,514 - 107,404,081 (+)NCBIGRCr8
mRatBN7.213104,833,810 - 104,875,405 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13104,833,873 - 104,875,405 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13107,351,461 - 107,392,990 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013108,735,317 - 108,776,855 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013105,953,273 - 105,994,797 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013112,031,614 - 112,073,187 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13112,031,594 - 112,073,186 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013116,587,097 - 116,628,803 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413109,148,815 - 109,190,322 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera13104,263,258 - 104,304,743 (+)NCBICelera
Cytogenetic Map13q27NCBI
Lamb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554892,568,650 - 2,607,595 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554892,547,611 - 2,603,079 (+)NCBIChiLan1.0ChiLan1.0
LAMB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2139,740,768 - 39,786,293 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1139,708,426 - 39,752,535 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01185,191,401 - 185,245,154 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11189,996,634 - 190,034,206 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1189,996,639 - 190,034,206 (-)Ensemblpanpan1.1panPan2
LAMB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.178,272,326 - 8,313,322 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl78,272,736 - 8,310,474 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha77,849,692 - 7,976,332 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.077,973,087 - 8,099,489 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl77,973,113 - 8,012,658 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.177,902,916 - 8,029,231 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.078,000,050 - 8,126,276 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.078,060,953 - 8,187,735 (-)NCBIUU_Cfam_GSD_1.0
Lamb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934466,190,090 - 66,247,713 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365573,450,247 - 3,487,954 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAMB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9133,311,834 - 133,351,197 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19133,298,009 - 133,351,162 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29146,594,591 - 146,598,263 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LAMB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12519,805,234 - 19,856,025 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2519,807,045 - 19,846,684 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605520,402,855 - 20,458,028 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lamb3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248072,320,168 - 2,378,349 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lamb3
1494 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:703
Count of miRNA genes:345
Interacting mature miRNAs:398
Transcripts:ENSMUST00000016315, ENSMUST00000159955, ENSMUST00000161526, ENSMUST00000162180
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1171983110195154279Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172303451195154279Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172303451195154279Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172532197195154279Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172632197195154279Mouse
1302023Orch4_mautoimmune orchitis resistance 4 (mouse)Not determined1175211318195154279Mouse
11532690Sluc37_msusceptibility to lung cancer 37 (mouse)1175468817194111528Mouse

Markers in Region
Lamb3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371195,169,892 - 195,170,012UniSTSGRCm37
MGSCv371195,156,273 - 195,157,026UniSTSGRCm37
Celera1200,221,002 - 200,221,122UniSTS
Celera1200,207,409 - 200,208,162UniSTS
Cytogenetic Map1H2-H6UniSTS
cM Map1104.0UniSTS
cM Map1104.0UniSTS
U43298  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381193,343,632 - 193,343,801UniSTSGRCm38
MGSCv371195,169,826 - 195,169,995UniSTSGRCm37
Celera1200,220,936 - 200,221,105UniSTS
Cytogenetic Map1H2-H6UniSTS
Whitehead_YAC1 UniSTS
Lamb3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381193,330,079 - 193,330,832UniSTSGRCm38
MGSCv371195,156,273 - 195,157,026UniSTSGRCm37
Celera1200,207,409 - 200,208,162UniSTS
Cytogenetic Map1H2-H6UniSTS
cM Map1104.0UniSTS
Lamb3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381193,343,698 - 193,343,818UniSTSGRCm38
MGSCv371195,169,892 - 195,170,012UniSTSGRCm37
Celera1200,221,002 - 200,221,122UniSTS
Cytogenetic Map1H2-H6UniSTS
cM Map1104.0UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000016315   ⟹   ENSMUSP00000016315
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,984,301 - 193,026,186 (+)Ensembl
GRCm38.p6 Ensembl1193,301,993 - 193,343,878 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159955   ⟹   ENSMUSP00000123875
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,984,551 - 193,026,183 (+)Ensembl
GRCm38.p6 Ensembl1193,302,243 - 193,343,875 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1193,003,003 - 193,008,299 (+)Ensembl
GRCm38.p6 Ensembl1193,320,695 - 193,325,991 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162180
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,984,529 - 192,985,727 (+)Ensembl
GRCm38.p6 Ensembl1193,302,221 - 193,303,419 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162977
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,890,058 - 192,936,782 (+)Ensembl
GRCm38.p6 Ensembl1193,207,750 - 193,254,474 (+)Ensembl
RefSeq Acc Id: ENSMUST00000192322   ⟹   ENSMUSP00000141302
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,890,040 - 193,008,300 (+)Ensembl
GRCm38.p6 Ensembl1193,207,732 - 193,325,992 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193128
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,955,646 - 192,962,889 (+)Ensembl
GRCm38.p6 Ensembl1193,273,338 - 193,280,581 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194407
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,890,007 - 192,891,246 (+)Ensembl
GRCm38.p6 Ensembl1193,207,699 - 193,208,938 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194677   ⟹   ENSMUSP00000142053
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,890,033 - 193,026,186 (+)Ensembl
GRCm38.p6 Ensembl1193,207,725 - 193,343,878 (+)Ensembl
RefSeq Acc Id: NM_001277928   ⟹   NP_001264857
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391192,984,551 - 193,026,186 (+)NCBI
GRCm381193,302,243 - 193,343,878 (+)NCBI
Celera1200,179,164 - 200,221,182 (+)NCBI
Sequence:
RefSeq Acc Id: NM_008484   ⟹   NP_032510
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391192,984,302 - 193,026,186 (+)NCBI
GRCm381193,301,994 - 193,343,878 (+)NCBI
MGSCv371195,128,188 - 195,170,072 (+)RGD
Celera1200,179,164 - 200,221,182 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006497232   ⟹   XP_006497295
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391192,984,257 - 193,026,186 (+)NCBI
GRCm381193,301,949 - 193,343,878 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497233   ⟹   XP_006497296
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391192,976,661 - 193,026,186 (+)NCBI
GRCm381193,294,353 - 193,343,878 (+)NCBI
Sequence:
RefSeq Acc Id: NP_032510   ⟸   NM_008484
- Peptide Label: precursor
- UniProtKB: Q91V90 (UniProtKB/Swiss-Prot),   Q61087 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001264857   ⟸   NM_001277928
- Peptide Label: precursor
- UniProtKB: Q91V90 (UniProtKB/Swiss-Prot),   Q61087 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006497296   ⟸   XM_006497233
- Peptide Label: isoform X1
- UniProtKB: Q91V90 (UniProtKB/Swiss-Prot),   Q61087 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006497295   ⟸   XM_006497232
- Peptide Label: isoform X1
- UniProtKB: Q91V90 (UniProtKB/Swiss-Prot),   Q61087 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000123875   ⟸   ENSMUST00000159955
RefSeq Acc Id: ENSMUSP00000016315   ⟸   ENSMUST00000016315
RefSeq Acc Id: ENSMUSP00000141302   ⟸   ENSMUST00000192322
RefSeq Acc Id: ENSMUSP00000142053   ⟸   ENSMUST00000194677
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q61087-F1-model_v2 AlphaFold Q61087 1-1168 view protein structure

Promoters
RGD ID:6876174
Promoter ID:EPDNEW_M1538
Type:initiation region
Name:Lamb3_1
Description:Mus musculus laminin, beta 3 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381193,302,075 - 193,302,135EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99915 AgrOrtholog
Ensembl Genes ENSMUSG00000026639 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000016315 ENTREZGENE
  ENSMUST00000016315.16 UniProtKB/Swiss-Prot
  ENSMUST00000159955 ENTREZGENE
  ENSMUST00000159955.2 UniProtKB/Swiss-Prot
  ENSMUST00000192322.6 UniProtKB/TrEMBL
  ENSMUST00000194677 ENTREZGENE
  ENSMUST00000194677.6 UniProtKB/Swiss-Prot
Gene3D-CATH Galactose-binding domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Methyl-accepting chemotaxis protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tie2 ligand-binding domain superfamily UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/Swiss-Prot
  Laminin_EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:16780 UniProtKB/Swiss-Prot
MGD MGI:99915 ENTREZGENE
NCBI Gene 16780 ENTREZGENE
PANTHER LAMININ SUBUNIT BETA-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NETRIN/LAMININ-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Laminin_EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lamb3 PhenoGen
PRINTS EGFLAMININ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/Swiss-Prot
  EGF_2 UniProtKB/Swiss-Prot
  EGF_LAM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LAMININ_NTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EGF UniProtKB/Swiss-Prot
  EGF_Lam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LamNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YVX1_MOUSE UniProtKB/TrEMBL
  LAMB3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q61964_MOUSE UniProtKB/TrEMBL
  Q8C5B3_MOUSE UniProtKB/TrEMBL
  Q91V90 ENTREZGENE
UniProt Secondary Q91V90 UniProtKB/Swiss-Prot