Acer3 (alkaline ceramidase 3) - Rat Genome Database

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Gene: Acer3 (alkaline ceramidase 3) Mus musculus
Analyze
Symbol: Acer3
Name: alkaline ceramidase 3
RGD ID: 1558553
MGI Page MGI
Description: Enables phytoceramidase activity. Involved in ceramide catabolic process; inflammatory response; and sphingosine biosynthetic process. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Is expressed in hair; integumental system; vibrissa; and vibrissa follicle. Orthologous to human ACER3 (alkaline ceramidase 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110057L18Rik; 5430429L08Rik; alkaline CDase 3; alkaline phytoceramidase; alkCDase 3; aPHC; AV015045; Ph; Phca; phytoceramidase, alkaline
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39797,863,015 - 97,970,415 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl797,855,596 - 97,970,415 (-)EnsemblGRCm39 Ensembl
GRCm38798,213,808 - 98,321,208 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl798,206,389 - 98,321,208 (-)EnsemblGRCm38mm10GRCm38
MGSCv377105,362,170 - 105,458,037 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36798,088,852 - 98,184,719 (-)NCBIMGSCv36mm8
Celera798,537,783 - 98,626,816 (-)NCBICelera
Cytogenetic Map7E1NCBI
cM Map753.65NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Alkaline ceramidase 3 deficiency aggravates colitis and colitis-associated tumorigenesis in mice by hyperactivating the innate immune system. Wang K, etal., Cell Death Dis. 2016 Mar 3;7:e2124. doi: 10.1038/cddis.2016.36.
8. Targeting alkaline ceramidase 3 alleviates the severity of nonalcoholic steatohepatitis by reducing oxidative stress. Wang K, etal., Cell Death Dis. 2020 Jan 16;11(1):28. doi: 10.1038/s41419-019-2214-9.
9. Alkaline ceramidase 3 promotes growth of hepatocellular carcinoma cells via regulating S1P/S1PR2/PI3K/AKT signaling. Yin Y, etal., Pathol Res Pract. 2018 Sep;214(9):1381-1387. doi: 10.1016/j.prp.2018.07.029. Epub 2018 Jul 27.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:14681479   PMID:16141072   PMID:16141073   PMID:19706712   PMID:21267068   PMID:21873635   PMID:23096701  
PMID:26474409   PMID:29401619   PMID:32959379  


Genomics

Comparative Map Data
Acer3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39797,863,015 - 97,970,415 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl797,855,596 - 97,970,415 (-)EnsemblGRCm39 Ensembl
GRCm38798,213,808 - 98,321,208 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl798,206,389 - 98,321,208 (-)EnsemblGRCm38mm10GRCm38
MGSCv377105,362,170 - 105,458,037 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36798,088,852 - 98,184,719 (-)NCBIMGSCv36mm8
Celera798,537,783 - 98,626,816 (-)NCBICelera
Cytogenetic Map7E1NCBI
cM Map753.65NCBI
ACER3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381176,860,918 - 77,026,797 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1176,860,859 - 77,026,797 (+)EnsemblGRCh38hg38GRCh38
GRCh371176,571,962 - 76,737,841 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361176,249,601 - 76,411,617 (+)NCBINCBI36Build 36hg18NCBI36
Build 341176,249,600 - 76,411,615NCBI
Celera1173,879,386 - 74,042,342 (+)NCBICelera
Cytogenetic Map11q13.5NCBI
HuRef1172,869,413 - 73,032,747 (+)NCBIHuRef
CHM1_11176,454,989 - 76,617,931 (+)NCBICHM1_1
T2T-CHM13v2.01176,791,211 - 76,957,150 (+)NCBIT2T-CHM13v2.0
Acer3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81161,915,397 - 162,017,802 (-)NCBIGRCr8
mRatBN7.21152,504,180 - 152,606,596 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1152,504,186 - 152,606,591 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1160,491,517 - 160,594,641 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01167,671,695 - 167,774,816 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01160,545,214 - 160,648,336 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01163,160,987 - 163,263,621 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1163,160,979 - 163,263,606 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01169,367,775 - 169,469,576 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41155,455,466 - 155,556,319 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1150,595,013 - 150,696,477 (-)NCBICelera
Cytogenetic Map1q32NCBI
Acer3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541414,746,529 - 14,848,151 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541414,741,027 - 14,846,931 (-)NCBIChiLan1.0ChiLan1.0
ACER3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2977,780,518 - 77,946,567 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11178,827,701 - 78,994,744 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01171,911,204 - 72,077,528 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11175,557,846 - 75,717,627 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1175,557,846 - 75,717,586 (+)Ensemblpanpan1.1panPan2
ACER3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12121,711,315 - 21,863,409 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2121,714,156 - 21,863,320 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2121,541,041 - 21,692,389 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02121,911,015 - 22,065,639 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2121,908,919 - 22,065,649 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12121,686,424 - 21,836,835 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02121,904,895 - 22,056,205 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02121,826,685 - 21,978,077 (-)NCBIUU_Cfam_GSD_1.0
Acer3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494763,891,661 - 64,079,838 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364985,496,991 - 5,653,206 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364985,496,991 - 5,653,206 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACER3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl910,967,857 - 11,162,502 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1910,985,078 - 11,167,386 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2912,135,522 - 12,190,445 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACER3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1168,072,323 - 68,228,036 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl168,072,544 - 68,227,736 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604357,546,989 - 57,716,409 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acer3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462486337,148 - 95,211 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462486337,148 - 96,550 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Acer3
3589 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2921
Count of miRNA genes:587
Interacting mature miRNAs:720
Transcripts:ENSMUST00000033020, ENSMUST00000120520, ENSMUST00000137899, ENSMUST00000151258
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
11553865Stmm1c_mskin tumor modifier of MSM 1c (mouse)76578898699788986Mouse
11553866Stmm1d_mskin tumor modifier of MSM 1d (mouse)76578898699788986Mouse
27095937Ulnl7_mulna length 7, 10 week (mouse)76644974898349207Mouse
1301826Pgia3_mproteoglycan induced arthritis 3 (mouse)Not determined767290094101290240Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767290094101290240Mouse
1300620Pgia21_mproteoglycan induced arthritis 21 (mouse)Not determined767290094101290240Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768365595102365702Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse
27226792Feml7_mfemur length 7, 5 week (mouse)78614920898949207Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
27095929Pglq8_mpelvic girdle length QTL 8, 10 week (mouse)787849208108099207Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
13464255Ifvrq2_minfluenza virus resistance QTL 2 (mouse)792500698106455693Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse

Markers in Region
BB361171  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38798,213,897 - 98,214,045UniSTSGRCm38
MGSCv377105,362,407 - 105,362,555UniSTSGRCm37
Celera798,538,020 - 98,538,168UniSTS
Cytogenetic Map7E2UniSTS
Whitehead/MRC_RH7997.1UniSTS
AV015045  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38798,216,569 - 98,216,709UniSTSGRCm38
MGSCv377105,365,079 - 105,365,219UniSTSGRCm37
Celera798,540,689 - 98,540,829UniSTS
Cytogenetic Map7E2UniSTS
Whitehead/MRC_RH7996.1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001360615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC111084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC119880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000033020   ⟹   ENSMUSP00000033020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl797,855,596 - 97,958,745 (-)Ensembl
GRCm38.p6 Ensembl798,206,389 - 98,309,538 (-)Ensembl
RefSeq Acc Id: ENSMUST00000120520   ⟹   ENSMUSP00000112884
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl797,862,865 - 97,970,415 (-)Ensembl
GRCm38.p6 Ensembl798,213,658 - 98,321,208 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137899   ⟹   ENSMUSP00000120334
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl797,901,097 - 97,958,713 (-)Ensembl
GRCm38.p6 Ensembl798,251,890 - 98,309,506 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151258   ⟹   ENSMUSP00000116127
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl797,865,650 - 97,958,735 (-)Ensembl
GRCm38.p6 Ensembl798,216,443 - 98,309,528 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206182
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl797,872,153 - 97,876,095 (-)Ensembl
GRCm38.p6 Ensembl798,222,946 - 98,226,888 (-)Ensembl
RefSeq Acc Id: NM_001360615   ⟹   NP_001347544
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39797,863,017 - 97,970,415 (-)NCBI
GRCm38798,213,810 - 98,321,208 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001360616   ⟹   NP_001347545
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39797,863,017 - 97,958,749 (-)NCBI
GRCm38798,213,810 - 98,309,542 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001360617   ⟹   NP_001347546
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39797,863,017 - 97,958,749 (-)NCBI
GRCm38798,213,810 - 98,309,542 (-)NCBI
Sequence:
RefSeq Acc Id: NM_025408   ⟹   NP_079684
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39797,863,017 - 97,958,749 (-)NCBI
GRCm38798,213,810 - 98,309,542 (-)NCBI
MGSCv377105,362,170 - 105,458,037 (-)RGD
Celera798,537,783 - 98,626,816 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_153759
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39797,863,017 - 97,958,749 (-)NCBI
GRCm38798,213,810 - 98,309,542 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242889   ⟹   XP_030098749
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39797,863,015 - 97,958,742 (-)NCBI
GRCm38798,213,808 - 98,309,513 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004934168
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39797,865,646 - 97,958,766 (-)NCBI
Sequence:
RefSeq Acc Id: NP_079684   ⟸   NM_025408
- Peptide Label: isoform 1
- UniProtKB: Q9D0X4 (UniProtKB/Swiss-Prot),   Q542R2 (UniProtKB/Swiss-Prot),   Q9D3J4 (UniProtKB/Swiss-Prot),   Q9D099 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030098749   ⟸   XM_030242889
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001347544   ⟸   NM_001360615
- Peptide Label: isoform 2
- UniProtKB: D3YTU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001347545   ⟸   NM_001360616
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001347546   ⟸   NM_001360617
- Peptide Label: isoform 4
RefSeq Acc Id: ENSMUSP00000033020   ⟸   ENSMUST00000033020
RefSeq Acc Id: ENSMUSP00000116127   ⟸   ENSMUST00000151258
RefSeq Acc Id: ENSMUSP00000112884   ⟸   ENSMUST00000120520
RefSeq Acc Id: ENSMUSP00000120334   ⟸   ENSMUST00000137899

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D099-F1-model_v2 AlphaFold Q9D099 1-267 view protein structure

Promoters
RGD ID:8664841
Promoter ID:EPDNEW_M10452
Type:multiple initiation site
Name:Acer3_1
Description:Mus musculus alkaline ceramidase 3 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38798,309,506 - 98,309,566EPDNEW
RGD ID:6840473
Promoter ID:MM_KWN:51632
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000076772,   OTTMUST00000076773,   OTTMUST00000076775
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367105,457,846 - 105,458,346 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913440 AgrOrtholog
Ensembl Genes ENSMUSG00000030760 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033020 ENTREZGENE
  ENSMUST00000033020.14 UniProtKB/Swiss-Prot
  ENSMUST00000120520 ENTREZGENE
  ENSMUST00000120520.8 UniProtKB/TrEMBL
  ENSMUST00000137899.2 UniProtKB/TrEMBL
  ENSMUST00000151258.8 UniProtKB/TrEMBL
InterPro ACER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:66190 UniProtKB/Swiss-Prot
MGD MGI:1913440 ENTREZGENE
NCBI Gene 66190 ENTREZGENE
PANTHER ALKALINE CERAMIDASE 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR46187 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ceramidase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Acer3 PhenoGen
UniProt ACER3_MOUSE UniProtKB/Swiss-Prot
  D3YTU8 ENTREZGENE, UniProtKB/TrEMBL
  D6RJ31_MOUSE UniProtKB/TrEMBL
  F6RA04_MOUSE UniProtKB/TrEMBL
  Q542R2 ENTREZGENE
  Q9D099 ENTREZGENE
  Q9D0X4 ENTREZGENE
  Q9D3J4 ENTREZGENE
UniProt Secondary Q542R2 UniProtKB/Swiss-Prot
  Q9D0X4 UniProtKB/Swiss-Prot
  Q9D3J4 UniProtKB/Swiss-Prot