Imported Disease Annotations - MGITerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Huntington's disease | | IAGP | | 13592920 | OMIM:143100 | MouseDO | | |
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Imported Disease Annotations - MGITerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Huntington's disease | | IAGP | | 13592920 | OMIM:143100 | MouseDO | | |
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# | Reference Title | Reference Citation |
1. | Identification of PSD-95 palmitoylating enzymes. | Fukata M, etal., Neuron 2004 Dec 16;44(6):987-96. |
2. | MGDs mouse GO annotations | MGD data from the GO Consortium |
3. | Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. | Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48. |
4. | Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
5. | Mouse MP Annotation Import Pipeline | RGD automated import pipeline |
6. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
7. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:8889548 | PMID:10349636 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:11544199 | PMID:12393793 | PMID:12466305 | PMID:12477932 | PMID:12520002 | PMID:14610273 | PMID:15489334 |
PMID:15489887 | PMID:15603740 | PMID:15618518 | PMID:16141072 | PMID:16141073 | PMID:16699508 | PMID:18287559 | PMID:18596047 | PMID:18794299 | PMID:20412781 | PMID:21636527 | PMID:21705657 |
PMID:21775500 | PMID:21873635 | PMID:22649491 | PMID:23077216 | PMID:24001771 | PMID:24277827 | PMID:24376823 | PMID:25253725 | PMID:25271157 | PMID:25478910 | PMID:26198635 | PMID:26232532 |
PMID:27911442 | PMID:27927242 | PMID:28167757 | PMID:30550785 | PMID:30846936 | PMID:32554809 | PMID:33207199 | PMID:36442513 | PMID:37064897 |
Zdhhc17 (Mus musculus - house mouse) |
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ZDHHC17 (Homo sapiens - human) |
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Zdhhc17 (Rattus norvegicus - Norway rat) |
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Zdhhc17 (Chinchilla lanigera - long-tailed chinchilla) |
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ZDHHC17 (Pan paniscus - bonobo/pygmy chimpanzee) |
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ZDHHC17 (Canis lupus familiaris - dog) |
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Zdhhc17 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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ZDHHC17 (Sus scrofa - pig) |
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ZDHHC17 (Chlorocebus sabaeus - green monkey) |
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Zdhhc17 (Heterocephalus glaber - naked mole-rat) |
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Variants in Zdhhc17
2781 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
BB187739 |
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UniSTS:236456 |
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D7Rat210 |
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RefSeq Transcripts | NM_001359622 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001359624 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_172554 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030245125 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036155819 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC153499 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AK038670 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK038681 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK039575 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK046891 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK083984 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK088853 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK122406 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK134967 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK162922 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AW911453 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC027101 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC051527 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC058772 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC080664 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC117788 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC117789 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BE955669 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BQ560505 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466539 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000041723 ⟹ ENSMUSP00000043279 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000099285 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000217698 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000217793 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000217982 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000218895 ⟹ ENSMUSP00000151491 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000218972 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000218981 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000219307 ⟹ ENSMUSP00000151330 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000220247 ⟹ ENSMUSP00000151754 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001359622 ⟹ NP_001346551 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001359624 ⟹ NP_001346553 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_172554 ⟹ NP_766142 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030245125 ⟹ XP_030100985 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036155819 ⟹ XP_036011712 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001346551 | (Get FASTA) | NCBI Sequence Viewer |
NP_001346553 | (Get FASTA) | NCBI Sequence Viewer | |
NP_766142 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030100985 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036011712 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH51527 | (Get FASTA) | NCBI Sequence Viewer |
AAH58772 | (Get FASTA) | NCBI Sequence Viewer | |
AAI17789 | (Get FASTA) | NCBI Sequence Viewer | |
AAI17790 | (Get FASTA) | NCBI Sequence Viewer | |
BAC30090 | (Get FASTA) | NCBI Sequence Viewer | |
BAC30097 | (Get FASTA) | NCBI Sequence Viewer | |
BAC32912 | (Get FASTA) | NCBI Sequence Viewer | |
BAC39084 | (Get FASTA) | NCBI Sequence Viewer | |
BAC40614 | (Get FASTA) | NCBI Sequence Viewer | |
BAC65688 | (Get FASTA) | NCBI Sequence Viewer | |
BAE37117 | (Get FASTA) | NCBI Sequence Viewer | |
EDL21720 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000043279 | ||
ENSMUSP00000043279.8 | |||
ENSMUSP00000151330.2 | |||
ENSMUSP00000151491.2 | |||
ENSMUSP00000151754.2 | |||
GenBank Protein | Q80TN5 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_766142 ⟸ NM_172554 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q8BYQ2 (UniProtKB/Swiss-Prot), Q8BJ08 (UniProtKB/Swiss-Prot), Q8BYQ6 (UniProtKB/Swiss-Prot), Q80TN5 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | NP_001346553 ⟸ NM_001359624 |
- Peptide Label: | isoform 3 |
RefSeq Acc Id: | NP_001346551 ⟸ NM_001359622 |
- Peptide Label: | isoform 2 |
- UniProtKB: | Q0VFY6 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_030100985 ⟸ XM_030245125 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | ENSMUSP00000151491 ⟸ ENSMUST00000218895 |
RefSeq Acc Id: | ENSMUSP00000151330 ⟸ ENSMUST00000219307 |
RefSeq Acc Id: | ENSMUSP00000043279 ⟸ ENSMUST00000041723 |
RefSeq Acc Id: | ENSMUSP00000151754 ⟸ ENSMUST00000220247 |
RefSeq Acc Id: | XP_036011712 ⟸ XM_036155819 |
- Peptide Label: | isoform X1 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q80TN5-F1-model_v2 | AlphaFold | Q80TN5 | 1-632 | view protein structure |
RGD ID: | 6820113 | ||||||||
Promoter ID: | MM_KWN:5600 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | Brain, Kidney, Lung | ||||||||
Transcripts: | ENSMUST00000104906 | ||||||||
Position: |
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RGD ID: | 6819606 | ||||||||
Promoter ID: | MM_KWN:5602 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen | ||||||||
Transcripts: | NM_172554, UC007GZV.1, UC007GZW.1 | ||||||||
Position: |
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RGD ID: | 8673236 | ||||||||
Promoter ID: | EPDNEW_M14648 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Zdhhc17_1 | ||||||||
Description: | Mus musculus zinc finger, DHHC domain containing 17 , transcriptvariant 1, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:2445110 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000035798 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000041723 | ENTREZGENE |
ENSMUST00000041723.15 | UniProtKB/Swiss-Prot | |
ENSMUST00000218895.2 | UniProtKB/TrEMBL | |
ENSMUST00000219307.2 | UniProtKB/TrEMBL | |
ENSMUST00000220247.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.25.40.20 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
InterPro | Ankyrin_rpt | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ankyrin_rpt-contain_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Palmitoyltrfase_DHHC | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:320150 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MGD | MGI:2445110 | ENTREZGENE |
NCBI Gene | 320150 | ENTREZGENE |
PANTHER | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR24161:SF18 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | Ank | UniProtKB/TrEMBL |
Ank_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Ank_4 | UniProtKB/TrEMBL | |
DHHC | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Zdhhc17 | PhenoGen |
PRINTS | ANKYRIN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PROSITE | ANK_REP_REGION | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
ANK_REPEAT | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
DHHC | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SMART | ANK | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | SSF48403 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A1W2P6S3_MOUSE | UniProtKB/TrEMBL |
A0A1W2P760_MOUSE | UniProtKB/TrEMBL | |
A0A1W2P7M2_MOUSE | UniProtKB/TrEMBL | |
Q0VFY6 | ENTREZGENE, UniProtKB/TrEMBL | |
Q3TRB3_MOUSE | UniProtKB/TrEMBL | |
Q80TN5 | ENTREZGENE | |
Q8BIE0_MOUSE | UniProtKB/TrEMBL | |
Q8BIT5_MOUSE | UniProtKB/TrEMBL | |
Q8BJ08 | ENTREZGENE | |
Q8BYQ2 | ENTREZGENE | |
Q8BYQ6 | ENTREZGENE | |
ZDH17_MOUSE | UniProtKB/Swiss-Prot | |
UniProt Secondary | Q8BJ08 | UniProtKB/Swiss-Prot |
Q8BYQ2 | UniProtKB/Swiss-Prot | |
Q8BYQ6 | UniProtKB/Swiss-Prot |