Urgcp (upregulator of cell proliferation) - Rat Genome Database

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Gene: Urgcp (upregulator of cell proliferation) Mus musculus
Analyze
Symbol: Urgcp
Name: upregulator of cell proliferation
RGD ID: 1557848
MGI Page MGI
Description: Predicted to enable GTP binding activity. Predicted to be located in cytosol. Orthologous to human URGCP (upregulator of cell proliferation).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2010005J08Rik; 9130001I21Rik; AW060359; HBV X protein up-regulated gene 4 protein homolog; HBxAg up-regulated gene 4 protein homolog; mKIAA1507; RP23-385C16.7; up-regulator of cell proliferation; Urg4
RGD Orthologs
Human
Rat
Bonobo
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,663,417 - 5,712,376 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl115,663,417 - 5,712,376 (-)EnsemblGRCm39 Ensembl
GRCm38115,713,417 - 5,762,376 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,713,417 - 5,762,376 (-)EnsemblGRCm38mm10GRCm38
MGSCv37115,613,420 - 5,662,379 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36115,614,188 - 5,641,153 (-)NCBIMGSCv36mm8
Celera116,203,912 - 6,252,767 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.87NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:21267068  
PMID:28190767  


Genomics

Comparative Map Data
Urgcp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,663,417 - 5,712,376 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl115,663,417 - 5,712,376 (-)EnsemblGRCm39 Ensembl
GRCm38115,713,417 - 5,762,376 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,713,417 - 5,762,376 (-)EnsemblGRCm38mm10GRCm38
MGSCv37115,613,420 - 5,662,379 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36115,614,188 - 5,641,153 (-)NCBIMGSCv36mm8
Celera116,203,912 - 6,252,767 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.87NCBI
URGCP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38743,875,913 - 43,926,726 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl743,875,894 - 43,926,411 (-)EnsemblGRCh38hg38GRCh38
GRCh37743,915,512 - 43,966,325 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36743,882,026 - 43,932,521 (-)NCBINCBI36Build 36hg18NCBI36
Celera743,905,366 - 43,955,861 (-)NCBICelera
Cytogenetic Map7p13NCBI
HuRef743,800,542 - 43,850,705 (-)NCBIHuRef
CHM1_1743,919,395 - 43,969,911 (-)NCBICHM1_1
T2T-CHM13v2.0744,034,204 - 44,085,026 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2743,955,001 - 44,005,497 (-)NCBI
Urgcp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81484,808,616 - 84,852,785 (-)NCBIGRCr8
mRatBN7.21480,594,637 - 80,638,972 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1480,594,633 - 80,619,888 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1484,996,431 - 85,021,430 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01486,236,544 - 86,261,539 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01482,685,868 - 82,710,863 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01485,957,726 - 86,002,227 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1485,957,716 - 85,991,211 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01486,649,967 - 86,694,245 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41486,367,017 - 86,392,064 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1479,479,557 - 79,504,606 (-)NCBICelera
Cytogenetic Map14q21NCBI
URGCP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2644,523,614 - 44,574,369 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1792,848,544 - 92,899,132 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0740,324,724 - 40,375,428 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1740,408,771 - 40,421,002 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl740,405,063 - 40,421,002 (+)Ensemblpanpan1.1panPan2
LOC610578
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha161,932,794 - 1,983,870 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01614,878,093 - 14,929,211 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1614,905,538 - 14,929,211 (+)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.01614,509,260 - 14,560,323 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01614,489,751 - 14,540,971 (+)NCBIUU_Cfam_GSD_1.0
URGCP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1848,780,576 - 48,821,582 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11848,780,521 - 48,817,058 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21853,469,534 - 53,527,955 (+)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Urgcp
1807 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2960
Count of miRNA genes:594
Interacting mature miRNAs:699
Transcripts:ENSMUST00000053427, ENSMUST00000093362, ENSMUST00000118076, ENSMUST00000120306, ENSMUST00000140922, ENSMUST00000170116
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse

Markers in Region
BB519754  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38115,713,486 - 5,713,598UniSTSGRCm38
MGSCv37115,613,489 - 5,613,601UniSTSGRCm37
Celera116,203,981 - 6,204,092UniSTS
Cytogenetic Map11A1UniSTS
Whitehead/MRC_RH1128.09UniSTS
AW060359  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38115,715,077 - 5,715,156UniSTSGRCm38
MGSCv37115,615,080 - 5,615,159UniSTSGRCm37
Celera116,205,571 - 6,205,650UniSTS
Cytogenetic Map11A1UniSTS
Whitehead/MRC_RH1128.09UniSTS
UniSTS:236504  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38115,758,920 - 5,759,191UniSTSGRCm38
MGSCv37115,658,923 - 5,659,194UniSTSGRCm37
Celera116,249,306 - 6,249,577UniSTS
Cytogenetic Map11A1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001077661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK008128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL627069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY036098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY058620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY339716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN174878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000053427   ⟹   ENSMUSP00000055821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,663,417 - 5,712,376 (-)Ensembl
GRCm38.p6 Ensembl115,713,417 - 5,762,376 (-)Ensembl
RefSeq Acc Id: ENSMUST00000093362   ⟹   ENSMUSP00000091053
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,663,417 - 5,691,150 (-)Ensembl
GRCm38.p6 Ensembl115,713,417 - 5,741,150 (-)Ensembl
RefSeq Acc Id: ENSMUST00000118076   ⟹   ENSMUSP00000113589
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,664,987 - 5,712,376 (-)Ensembl
GRCm38.p6 Ensembl115,714,987 - 5,762,376 (-)Ensembl
RefSeq Acc Id: ENSMUST00000120306   ⟹   ENSMUSP00000113060
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,664,971 - 5,712,371 (-)Ensembl
GRCm38.p6 Ensembl115,714,971 - 5,762,371 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140922   ⟹   ENSMUSP00000120902
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,668,037 - 5,691,146 (-)Ensembl
GRCm38.p6 Ensembl115,718,037 - 5,741,146 (-)Ensembl
RefSeq Acc Id: ENSMUST00000170116   ⟹   ENSMUSP00000133216
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,663,417 - 5,712,376 (-)Ensembl
GRCm38.p6 Ensembl115,713,417 - 5,762,376 (-)Ensembl
RefSeq Acc Id: NM_001077661   ⟹   NP_001071129
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,663,417 - 5,712,376 (-)NCBI
GRCm38115,713,417 - 5,762,376 (-)NCBI
MGSCv37115,613,420 - 5,662,379 (-)RGD
Celera116,203,912 - 6,252,767 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001361588   ⟹   NP_001348517
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,663,417 - 5,712,376 (-)NCBI
GRCm38115,713,417 - 5,762,376 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361589   ⟹   NP_001348518
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,663,417 - 5,712,376 (-)NCBI
GRCm38115,713,417 - 5,762,376 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361590   ⟹   NP_001348519
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,663,417 - 5,691,176 (-)NCBI
GRCm38115,713,417 - 5,741,176 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361591   ⟹   NP_001348520
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,663,417 - 5,691,176 (-)NCBI
GRCm38115,713,417 - 5,741,176 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361592   ⟹   NP_001348521
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,663,417 - 5,712,376 (-)NCBI
GRCm38115,713,417 - 5,762,376 (-)NCBI
Sequence:
RefSeq Acc Id: NM_178623   ⟹   NP_848738
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,663,417 - 5,691,176 (-)NCBI
GRCm38115,713,417 - 5,741,176 (-)NCBI
MGSCv37115,613,420 - 5,662,379 (-)RGD
Celera116,203,912 - 6,252,767 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514815   ⟹   XP_006514878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,664,980 - 5,691,351 (-)NCBI
GRCm38115,714,980 - 5,741,351 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243753   ⟹   XP_011242055
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,664,983 - 5,691,199 (-)NCBI
GRCm38115,714,983 - 5,741,199 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243754   ⟹   XP_011242056
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,664,983 - 5,712,113 (-)NCBI
GRCm38115,714,983 - 5,762,001 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243755   ⟹   XP_011242057
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,664,980 - 5,691,158 (-)NCBI
GRCm38115,714,980 - 5,729,081 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243757   ⟹   XP_011242059
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,664,983 - 5,691,169 (-)NCBI
GRCm38115,714,983 - 5,741,169 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157006   ⟹   XP_036012899
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,664,980 - 5,691,523 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001071129 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348517 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348518 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348519 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348520 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348521 (Get FASTA)   NCBI Sequence Viewer  
  NP_848738 (Get FASTA)   NCBI Sequence Viewer  
  XP_006514878 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242055 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242056 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242057 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242059 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012899 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH16589 (Get FASTA)   NCBI Sequence Viewer  
  AAH66994 (Get FASTA)   NCBI Sequence Viewer  
  BAC28370 (Get FASTA)   NCBI Sequence Viewer  
  BAC29111 (Get FASTA)   NCBI Sequence Viewer  
  BAC31109 (Get FASTA)   NCBI Sequence Viewer  
  BAC98188 (Get FASTA)   NCBI Sequence Viewer  
  BAE38807 (Get FASTA)   NCBI Sequence Viewer  
  EDL40543 (Get FASTA)   NCBI Sequence Viewer  
  EDL40544 (Get FASTA)   NCBI Sequence Viewer  
  EDL40545 (Get FASTA)   NCBI Sequence Viewer  
  EDL40546 (Get FASTA)   NCBI Sequence Viewer  
  EDL40547 (Get FASTA)   NCBI Sequence Viewer  
  EDL40548 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000091053
  ENSMUSP00000091053.6
  ENSMUSP00000113060
  ENSMUSP00000113060.2
  ENSMUSP00000113589
  ENSMUSP00000113589.2
  ENSMUSP00000120902.2
GenBank Protein Q5NCI0 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001071129   ⟸   NM_001077661
- Peptide Label: isoform 2
- UniProtKB: Q6ZPP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_848738   ⟸   NM_178623
- Peptide Label: isoform 1
- UniProtKB: Q8CBP7 (UniProtKB/Swiss-Prot),   Q8C9K3 (UniProtKB/Swiss-Prot),   Q3TLI5 (UniProtKB/Swiss-Prot),   A0PJ66 (UniProtKB/Swiss-Prot),   Q8CC98 (UniProtKB/Swiss-Prot),   Q5NCI0 (UniProtKB/Swiss-Prot),   Q6ZPP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514878   ⟸   XM_006514815
- Peptide Label: isoform X3
- UniProtKB: Q6ZPP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242056   ⟸   XM_011243754
- Peptide Label: isoform X2
- UniProtKB: Q6ZPP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242055   ⟸   XM_011243753
- Peptide Label: isoform X1
- UniProtKB: Q6ZPP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242059   ⟸   XM_011243757
- Peptide Label: isoform X4
- UniProtKB: Q6ZPP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242057   ⟸   XM_011243755
- Peptide Label: isoform X3
- UniProtKB: Q6ZPP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001348518   ⟸   NM_001361589
- Peptide Label: isoform 2
- UniProtKB: Q6ZPP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001348521   ⟸   NM_001361592
- Peptide Label: isoform 3
- UniProtKB: Q6ZPP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001348517   ⟸   NM_001361588
- Peptide Label: isoform 2
- UniProtKB: Q6ZPP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001348520   ⟸   NM_001361591
- Peptide Label: isoform 2
- UniProtKB: Q6ZPP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001348519   ⟸   NM_001361590
- Peptide Label: isoform 2
- UniProtKB: Q6ZPP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000133216   ⟸   ENSMUST00000170116
RefSeq Acc Id: ENSMUSP00000113589   ⟸   ENSMUST00000118076
RefSeq Acc Id: ENSMUSP00000091053   ⟸   ENSMUST00000093362
RefSeq Acc Id: ENSMUSP00000055821   ⟸   ENSMUST00000053427
RefSeq Acc Id: ENSMUSP00000120902   ⟸   ENSMUST00000140922
RefSeq Acc Id: ENSMUSP00000113060   ⟸   ENSMUST00000120306
RefSeq Acc Id: XP_036012899   ⟸   XM_036157006
- Peptide Label: isoform X3
- UniProtKB: Q6ZPP3 (UniProtKB/TrEMBL)
Protein Domains
VLIG-type G

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5NCI0-F1-model_v2 AlphaFold Q5NCI0 1-926 view protein structure

Promoters
RGD ID:6821922
Promoter ID:MM_KWN:6309
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_178623,   OTTMUST00000011400,   UC007HWX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36115,641,011 - 5,641,511 (-)MPROMDB
RGD ID:6822449
Promoter ID:MM_KWN:6311
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   3T3L1_Day6,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000053427,   ENSMUST00000118076,   NM_001077661,   UC007HWW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36115,661,961 - 5,662,647 (-)MPROMDB
RGD ID:8673852
Promoter ID:EPDNEW_M14956
Type:single initiation site
Name:Urgcp_3
Description:Mus musculus upregulator of cell proliferation , transcript variant4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14957  EPDNEW_M14959  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38115,739,367 - 5,739,427EPDNEW
RGD ID:8673854
Promoter ID:EPDNEW_M14957
Type:initiation region
Name:Urgcp_1
Description:Mus musculus upregulator of cell proliferation , transcript variant4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14956  EPDNEW_M14959  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38115,741,124 - 5,741,184EPDNEW
RGD ID:8673858
Promoter ID:EPDNEW_M14959
Type:multiple initiation site
Name:Urgcp_2
Description:Mus musculus upregulator of cell proliferation , transcript variant4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14956  EPDNEW_M14957  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38115,762,398 - 5,762,458EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919296 AgrOrtholog
Ensembl Genes ENSMUSG00000049680 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000093362 ENTREZGENE
  ENSMUST00000093362.12 UniProtKB/Swiss-Prot
  ENSMUST00000118076 ENTREZGENE
  ENSMUST00000118076.8 UniProtKB/Swiss-Prot
  ENSMUST00000120306 ENTREZGENE
  ENSMUST00000120306.8 UniProtKB/Swiss-Prot
  ENSMUST00000140922.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro G_VLIG_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GTP_binding_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72046 UniProtKB/Swiss-Prot
MGD MGI:1919296 ENTREZGENE
NCBI Gene 72046 ENTREZGENE
PANTHER UP-REGULATOR OF CELL PROLIFERATION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  URG4-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Urgcp PhenoGen
PRINTS GTP1OBG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_VLIG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0PJ66 ENTREZGENE
  B0QZL8_MOUSE UniProtKB/TrEMBL
  Q3TLI5 ENTREZGENE
  Q5NCI0 ENTREZGENE
  Q6NXN0_MOUSE UniProtKB/TrEMBL
  Q6ZPP3 ENTREZGENE, UniProtKB/TrEMBL
  Q8C9K3 ENTREZGENE
  Q8CBP7 ENTREZGENE
  Q8CC98 ENTREZGENE
  URGCP_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A0PJ66 UniProtKB/Swiss-Prot
  Q3TLI5 UniProtKB/Swiss-Prot
  Q8C9K3 UniProtKB/Swiss-Prot
  Q8CBP7 UniProtKB/Swiss-Prot
  Q8CC98 UniProtKB/Swiss-Prot