Ceacam18 (CEA cell adhesion molecule 18) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ceacam18 (CEA cell adhesion molecule 18) Mus musculus
Analyze
Symbol: Ceacam18
Name: CEA cell adhesion molecule 18
RGD ID: 1557824
MGI Page MGI
Description: Predicted to be located in membrane. Orthologous to human CEACAM18 (CEA cell adhesion molecule 18).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2010110O04Rik; carcinoembryonic antigen-related cell adhesion molecule 1; carcinoembryonic antigen-related cell adhesion molecule 18; CEA-related cell adhesion molecule 1
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39743,284,094 - 43,298,719 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl743,284,131 - 43,298,719 (+)EnsemblGRCm39 Ensembl
GRCm38743,634,617 - 43,649,295 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl743,634,707 - 43,649,295 (+)EnsemblGRCm38mm10GRCm38
MGSCv37750,890,109 - 50,904,665 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36743,502,781 - 43,517,337 (+)NCBIMGSCv36mm8
Celera739,098,834 - 39,113,408 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:16139472   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750  


Genomics

Comparative Map Data
Ceacam18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39743,284,094 - 43,298,719 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl743,284,131 - 43,298,719 (+)EnsemblGRCm39 Ensembl
GRCm38743,634,617 - 43,649,295 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl743,634,707 - 43,649,295 (+)EnsemblGRCm38mm10GRCm38
MGSCv37750,890,109 - 50,904,665 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36743,502,781 - 43,517,337 (+)NCBIMGSCv36mm8
Celera739,098,834 - 39,113,408 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.25NCBI
CEACAM18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381951,478,539 - 51,491,301 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1951,478,539 - 51,491,301 (+)EnsemblGRCh38hg38GRCh38
GRCh371951,981,793 - 51,994,555 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361956,671,650 - 56,678,423 (+)NCBINCBI36Build 36hg18NCBI36
Celera1949,030,878 - 49,037,651 (+)NCBICelera
Cytogenetic Map19q13.41NCBI
HuRef1948,313,852 - 48,326,941 (+)NCBIHuRef
CHM1_11951,983,801 - 51,995,762 (+)NCBICHM1_1
T2T-CHM13v2.01954,567,160 - 54,579,923 (+)NCBIT2T-CHM13v2.0
Ceacam18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81103,207,593 - 103,222,203 (+)NCBIGRCr8
mRatBN7.2194,071,039 - 94,085,649 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl194,071,010 - 94,085,254 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx199,456,472 - 99,471,084 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01107,929,134 - 107,943,748 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01101,218,719 - 101,233,325 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0199,559,726 - 99,576,098 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl199,561,523 - 99,575,684 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01100,628,617 - 100,644,834 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4194,042,594 - 94,053,914 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera188,344,662 - 88,361,034 (+)NCBICelera
Cytogenetic Map1q22NCBI
CEACAM18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22057,503,338 - 57,535,166 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11959,424,795 - 59,456,609 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01948,419,324 - 48,432,926 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11957,288,745 - 57,317,684 (+)NCBIpanpan1.1PanPan1.1panPan2
CEACAM18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11105,761,119 - 105,770,140 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1105,761,081 - 105,769,863 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1105,333,784 - 105,344,519 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01106,270,420 - 106,281,149 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1106,270,383 - 106,279,658 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11105,942,194 - 105,952,929 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01105,583,074 - 105,593,809 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01106,378,492 - 106,389,229 (+)NCBIUU_Cfam_GSD_1.0
Ceacam18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934922,887,662 - 22,891,435 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049375856,049 - 8,885 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEACAM18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl655,748,287 - 55,759,741 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1655,749,224 - 55,759,788 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2651,566,761 - 51,568,780 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Ceacam18
546 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:235
Count of miRNA genes:197
Interacting mature miRNAs:210
Transcripts:ENSMUST00000032663
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3349772758148965Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3349772758148965Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3349772758148965Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3349772758148965Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73349772758148965Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73349772758148965Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000032663   ⟹   ENSMUSP00000032663
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl743,284,131 - 43,298,719 (+)Ensembl
GRCm38.p6 Ensembl743,634,707 - 43,649,295 (+)Ensembl
RefSeq Acc Id: NM_001419040   ⟹   NP_001405969
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39743,284,153 - 43,298,719 (+)NCBI
RefSeq Acc Id: NM_028236   ⟹   NP_082512
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39743,284,153 - 43,298,719 (+)NCBI
GRCm38743,634,739 - 43,649,295 (+)NCBI
MGSCv37750,890,109 - 50,904,665 (+)RGD
Celera739,098,834 - 39,113,408 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017312326   ⟹   XP_017167815
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39743,284,094 - 43,298,337 (+)NCBI
GRCm38743,634,670 - 43,648,913 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017312327   ⟹   XP_017167816
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39743,284,094 - 43,298,337 (+)NCBI
GRCm38743,634,670 - 43,648,913 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017312328   ⟹   XP_017167817
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39743,286,442 - 43,298,337 (+)NCBI
GRCm38743,637,018 - 43,648,913 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_082512   ⟸   NM_028236
- Peptide Label: isoform 1 precursor
- UniProtKB: Q9D871 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017167815   ⟸   XM_017312326
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017167816   ⟸   XM_017312327
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017167817   ⟸   XM_017312328
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSMUSP00000032663   ⟸   ENSMUST00000032663
RefSeq Acc Id: NP_001405969   ⟸   NM_001419040
- Peptide Label: isoform 2 precursor
Protein Domains
Ig-like C2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D871-F1-model_v2 AlphaFold Q9D871 1-376 view protein structure

Promoters
RGD ID:8663781
Promoter ID:EPDNEW_M9922
Type:initiation region
Name:Ceacam18_1
Description:Mus musculus carcinoembryonic antigen-related cell adhesion molecule18 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38743,634,689 - 43,634,749EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919681 AgrOrtholog
Ensembl Genes ENSMUSG00000030472 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000032663 ENTREZGENE
  ENSMUST00000032663.10 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
InterPro Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Ig_V-set UniProtKB/Swiss-Prot
KEGG Report mmu:72431 UniProtKB/Swiss-Prot
MGD MGI:1919681 ENTREZGENE
NCBI Gene 72431 ENTREZGENE
PANTHER CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 18 UniProtKB/Swiss-Prot
  CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8 UniProtKB/Swiss-Prot
Pfam Ig_2 UniProtKB/Swiss-Prot
  V-set UniProtKB/Swiss-Prot
PhenoGen Ceacam18 PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot
SMART IGc2 UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
UniProt CEA18_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-14 Ceacam18  CEA cell adhesion molecule 18  Ceacam18  carcinoembryonic antigen-related cell adhesion molecule 18  Symbol and/or name change 5135510 APPROVED