Zftraf1 (zinc finger TRAF type containing 1) - Rat Genome Database

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Gene: Zftraf1 (zinc finger TRAF type containing 1) Mus musculus
Analyze
Symbol: Zftraf1
Name: zinc finger TRAF type containing 1
RGD ID: 1557821
MGI Page MGI
Description: Located in cytoplasm and nuclear envelope. Orthologous to human ZFTRAF1 (zinc finger TRAF-type containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110031M01Rik; AU042374; Ch; Chrp; Cyhr1; cysteine and histidine rich 1; cysteine and histidine-rich cytoplasmic protein; cysteine and histidine-rich protein 1; Tmem276; Transmembrane protein 276; zinc finger TRAF-type containing 1; Zinc finger TRAF-type-containing protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,527,586 - 76,541,120 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,527,595 - 76,544,261 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1576,531,127 - 76,541,120 (-)EnsemblGRCm39 Ensembl
GRCm381576,643,395 - 76,660,208 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,643,395 - 76,660,117 (-)EnsemblGRCm38mm10GRCm38
MGSCv371576,476,197 - 76,490,538 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,473,022 - 76,487,363 (-)NCBIMGSCv36mm8
Celera1578,139,374 - 78,153,720 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10745073   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14621295   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:21873635  


Genomics

Comparative Map Data
Zftraf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,527,586 - 76,541,120 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,527,595 - 76,544,261 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1576,531,127 - 76,541,120 (-)EnsemblGRCm39 Ensembl
GRCm381576,643,395 - 76,660,208 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,643,395 - 76,660,117 (-)EnsemblGRCm38mm10GRCm38
MGSCv371576,476,197 - 76,490,538 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,473,022 - 76,487,363 (-)NCBIMGSCv36mm8
Celera1578,139,374 - 78,153,720 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.2NCBI
ZFTRAF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388144,449,582 - 144,462,871 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8144,449,582 - 144,462,871 (-)EnsemblGRCh38hg38GRCh38
GRCh378145,674,965 - 145,688,254 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368145,660,016 - 145,661,657 (-)NCBINCBI36Build 36hg18NCBI36
Build 348145,660,015 - 145,661,657NCBI
Celera8141,849,696 - 141,865,276 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8140,788,496 - 140,804,150 (-)NCBIHuRef
CHM1_18145,713,502 - 145,729,303 (-)NCBICHM1_1
T2T-CHM13v2.08145,619,341 - 145,632,631 (-)NCBIT2T-CHM13v2.0
Zftraf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87110,244,634 - 110,258,071 (-)NCBIGRCr8
mRatBN7.27108,363,989 - 108,377,428 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7108,364,381 - 108,380,021 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07117,706,608 - 117,719,770 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Cytogenetic Map7q34NCBI
Zftraf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554543,069,887 - 3,086,954 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554543,069,887 - 3,087,172 (-)NCBIChiLan1.0ChiLan1.0
ZFTRAF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27161,941,269 - 161,954,417 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18137,470,685 - 137,483,484 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08141,217,179 - 141,229,953 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18144,205,966 - 144,221,599 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8144,205,966 - 144,221,599 (-)Ensemblpanpan1.1panPan2
CYHR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,860,452 - 37,871,982 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,858,424 - 37,874,624 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,821,425 - 37,832,955 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01338,334,398 - 38,345,929 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1338,334,407 - 38,348,670 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11338,026,153 - 38,037,683 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01338,134,788 - 38,146,318 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01338,611,235 - 38,622,765 (-)NCBIUU_Cfam_GSD_1.0
Zftraf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303373,205 - 389,485 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364707,799,298 - 7,815,737 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364707,799,304 - 7,813,420 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM276
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4332,409 - 334,109 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14332,414 - 334,115 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZFTRAF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18138,661,584 - 138,677,000 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8138,674,676 - 138,677,238 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 Ensembl8138,662,031 - 138,674,142 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660391,179,090 - 1,195,052 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zftraf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473512,394,710 - 12,408,851 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473512,394,710 - 12,411,520 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zftraf1
342 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1913
Count of miRNA genes:703
Interacting mature miRNAs:928
Transcripts:ENSMUST00000066677, ENSMUST00000081291, ENSMUST00000176274, ENSMUST00000177359
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154485914178859281Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
1301779Dpml_mdopamine loss (mouse)Not determined155100469476794493Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1300844Emo2_memotionality 2 (mouse)Not determined157237245976794493Mouse
1302002Cocia2_mcocaine induced activation 2 (mouse)Not determined157237245979899178Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
13442492Mecth2_mmechanosensation threshold 2 (mouse)157466284979387201Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse

Markers in Region
AW556853  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381576,644,123 - 76,644,247UniSTSGRCm38
MGSCv371576,474,553 - 76,474,677UniSTSGRCm37
Celera1578,137,730 - 78,137,854UniSTS
Cytogenetic Map15E1UniSTS
Whitehead/MRC_RH15649.04UniSTS
MARC_8217-8218:996688412:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381576,648,196 - 76,648,975UniSTSGRCm38
MGSCv371576,478,626 - 76,479,405UniSTSGRCm37
Celera1578,141,803 - 78,142,582UniSTS
Cytogenetic Map15E1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001276321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC156550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW455382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC082772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX512375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX522828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY287678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ105770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000066677   ⟹   ENSMUSP00000063317
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,542,339 - 76,544,308 (-)Ensembl
GRCm38.p6 Ensembl1576,658,139 - 76,660,108 (-)Ensembl
RefSeq Acc Id: ENSMUST00000081291   ⟹   ENSMUSP00000080043
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,527,595 - 76,544,261 (-)Ensembl
GRCm38.p6 Ensembl1576,643,395 - 76,660,061 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176274   ⟹   ENSMUSP00000134739
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,531,127 - 76,541,120 (-)Ensembl
GRCm38.p6 Ensembl1576,646,927 - 76,656,920 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177359   ⟹   ENSMUSP00000135505
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,542,340 - 76,544,317 (-)Ensembl
GRCm38.p6 Ensembl1576,658,140 - 76,660,117 (-)Ensembl
RefSeq Acc Id: ENSMUST00000229524   ⟹   ENSMUSP00000155816
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,531,191 - 76,540,916 (-)Ensembl
GRCm38.p6 Ensembl1576,646,991 - 76,656,716 (-)Ensembl
RefSeq Acc Id: ENSMUST00000229541
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,533,236 - 76,540,916 (-)Ensembl
GRCm38.p6 Ensembl1576,649,036 - 76,656,716 (-)Ensembl
RefSeq Acc Id: ENSMUST00000229552
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,531,136 - 76,535,028 (-)Ensembl
GRCm38.p6 Ensembl1576,646,936 - 76,650,828 (-)Ensembl
RefSeq Acc Id: ENSMUST00000230719
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,542,333 - 76,543,933 (-)Ensembl
GRCm38.p6 Ensembl1576,658,133 - 76,659,733 (-)Ensembl
RefSeq Acc Id: ENSMUST00000231152   ⟹   ENSMUSP00000155579
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,542,333 - 76,543,956 (-)Ensembl
GRCm38.p6 Ensembl1576,658,133 - 76,659,756 (-)Ensembl
RefSeq Acc Id: NM_001276321   ⟹   NP_001263250
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,531,127 - 76,541,120 (-)NCBI
GRCm381576,646,927 - 76,656,901 (-)NCBI
Celera1578,137,002 - 78,153,820 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357882   ⟹   NP_001344811
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,527,586 - 76,541,120 (-)NCBI
GRCm381576,643,395 - 76,656,894 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001408103   ⟹   NP_001395032
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,527,586 - 76,541,120 (-)NCBI
RefSeq Acc Id: NM_001408104   ⟹   NP_001395033
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,531,127 - 76,541,120 (-)NCBI
RefSeq Acc Id: NM_001408207   ⟹   NP_001395136
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,531,127 - 76,541,120 (-)NCBI
RefSeq Acc Id: NM_001408208   ⟹   NP_001395137
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,527,586 - 76,541,120 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001263250   ⟸   NM_001276321
- Peptide Label: isoform 1
- UniProtKB: H3BIV6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001344811   ⟸   NM_001357882
- Peptide Label: isoform 2
- UniProtKB: P0DW87 (UniProtKB/Swiss-Prot),   H3BIV6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000063317   ⟸   ENSMUST00000066677
RefSeq Acc Id: ENSMUSP00000135505   ⟸   ENSMUST00000177359
RefSeq Acc Id: ENSMUSP00000155579   ⟸   ENSMUST00000231152
RefSeq Acc Id: ENSMUSP00000080043   ⟸   ENSMUST00000081291
RefSeq Acc Id: ENSMUSP00000134739   ⟸   ENSMUST00000176274
RefSeq Acc Id: ENSMUSP00000155816   ⟸   ENSMUST00000229524
RefSeq Acc Id: NP_001395032   ⟸   NM_001408103
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001395137   ⟸   NM_001408208
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001395033   ⟸   NM_001408104
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001395136   ⟸   NM_001408207
- Peptide Label: isoform 3
Protein Domains
RING-type   TRAF-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QXA1-F1-model_v2 AlphaFold Q9QXA1 1-311 view protein structure

Promoters
RGD ID:6825886
Promoter ID:MM_KWN:18893
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Spleen
Transcripts:UC007WLG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361576,479,591 - 76,481,957 (-)MPROMDB
RGD ID:6825901
Promoter ID:MM_KWN:18894
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000089514,   UC007WLH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361576,487,241 - 76,487,857 (-)MPROMDB
RGD ID:6825892
Promoter ID:MM_KWN:18896
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_2Hour,   Liver,   MEF_B4
Transcripts:ENSMUST00000066677,   ENSMUST00000081291,   NM_180962
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361576,490,236 - 76,490,736 (-)MPROMDB
RGD ID:8684140
Promoter ID:EPDNEW_M20101
Type:multiple initiation site
Name:Cyhr1_1
Description:Mus musculus cysteine and histidine rich 1 , transcript variant5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20102  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381576,656,920 - 76,656,980EPDNEW
RGD ID:8684142
Promoter ID:EPDNEW_M20102
Type:multiple initiation site
Name:Cyhr1_2
Description:Mus musculus cysteine and histidine rich 1 , transcript variant5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20101  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381576,659,725 - 76,659,785EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1859320 AgrOrtholog
Ensembl Genes ENSMUSG00000053929 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSMUSG00000121583 Ensembl, UniProtKB/Swiss-Prot
  ENSMUSG00000121584 Ensembl
Ensembl Transcript ENSMUST00000081291.13 UniProtKB/Swiss-Prot
  ENSMUST00000176274 ENTREZGENE
  ENSMUST00000176274.2 UniProtKB/Swiss-Prot
  ENSMUST00000229524.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CYHR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sina-like_RING UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_TRAF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:125488414 UniProtKB/Swiss-Prot
  mmu:54151 UniProtKB/Swiss-Prot
MGD MGI:1859320 ENTREZGENE
NCBI Gene 54151 ENTREZGENE
PANTHER CYSTEINE AND HISTIDINE-RICH PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23059 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sina_RING UniProtKB/TrEMBL
PhenoGen Zftraf1 PhenoGen
PROSITE ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_TRAF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRAF domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2R8VI70_MOUSE UniProtKB/TrEMBL
  H3BIV6 ENTREZGENE
  P0DW87 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary H3BIV6 UniProtKB/Swiss-Prot
  Q6P6J7 UniProtKB/Swiss-Prot
  Q6ZQA2 UniProtKB/Swiss-Prot
  Q9D134 UniProtKB/Swiss-Prot
  Q9QXA1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-01-16 Zftraf1  zinc finger TRAF type containing 1  Cyhr1  cysteine and histidine rich 1  Symbol and/or name updated 27372883 PROVISIONAL