Lmbrd2 (LMBR1 domain containing 2) - Rat Genome Database

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Gene: Lmbrd2 (LMBR1 domain containing 2) Mus musculus
Analyze
Symbol: Lmbrd2
Name: LMBR1 domain containing 2
RGD ID: 1557554
MGI Page MGI
Description: Predicted to be involved in adrenergic receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be active in membrane. Is expressed in Meckel's cartilage; cranial ganglion; hindlimb long bone; and tarsus. Orthologous to human LMBRD2 (LMBR1 domain containing 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9930036E21Rik; G-protein coupled receptor-associated protein LMBRD2; LMBR1 domain-containing protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39159,140,622 - 9,202,564 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl159,140,637 - 9,202,569 (+)EnsemblGRCm39 Ensembl
GRCm38159,140,528 - 9,202,483 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl159,140,550 - 9,202,483 (+)EnsemblGRCm38mm10GRCm38
MGSCv37159,070,326 - 9,127,206 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36159,067,452 - 9,124,332 (+)NCBIMGSCv36mm8
Celera158,958,055 - 9,015,060 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map153.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:21873635  
PMID:32554809   PMID:32560809   PMID:38187761  


Genomics

Comparative Map Data
Lmbrd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39159,140,622 - 9,202,564 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl159,140,637 - 9,202,569 (+)EnsemblGRCm39 Ensembl
GRCm38159,140,528 - 9,202,483 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl159,140,550 - 9,202,483 (+)EnsemblGRCm38mm10GRCm38
MGSCv37159,070,326 - 9,127,206 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36159,067,452 - 9,124,332 (+)NCBIMGSCv36mm8
Celera158,958,055 - 9,015,060 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map153.86NCBI
LMBRD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38536,098,407 - 36,151,887 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl536,098,407 - 36,151,887 (-)EnsemblGRCh38hg38GRCh38
GRCh37536,098,509 - 36,151,989 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36536,139,171 - 36,187,772 (-)NCBINCBI36Build 36hg18NCBI36
Celera535,989,107 - 36,037,708 (-)NCBICelera
Cytogenetic Map5p13.2NCBI
HuRef536,054,563 - 36,103,164 (-)NCBIHuRef
CHM1_1536,106,153 - 36,154,757 (-)NCBICHM1_1
T2T-CHM13v2.0536,346,691 - 36,400,223 (-)NCBIT2T-CHM13v2.0
Lmbrd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8259,916,736 - 59,978,739 (+)NCBIGRCr8
mRatBN7.2258,189,558 - 58,251,565 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl258,189,558 - 58,247,076 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx265,287,658 - 65,345,220 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0263,399,687 - 63,464,790 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0258,401,006 - 58,466,109 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0258,534,474 - 58,590,767 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl258,534,476 - 58,590,758 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0277,621,884 - 77,678,211 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4258,797,494 - 58,875,181 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera253,798,331 - 53,857,736 (+)NCBICelera
Cytogenetic Map2q16NCBI
Lmbrd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542620,928,323 - 20,972,878 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542620,928,323 - 20,972,371 (-)NCBIChiLan1.0ChiLan1.0
LMBRD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2474,177,831 - 74,231,252 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1572,331,385 - 72,384,884 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0574,211,704 - 74,265,076 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1579,493,081 - 79,546,337 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl579,501,631 - 79,540,854 (+)Ensemblpanpan1.1panPan2
LMBRD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1472,386,619 - 72,429,533 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl472,394,972 - 72,425,020 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha471,996,325 - 72,040,293 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0472,892,472 - 72,936,439 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl472,892,577 - 72,936,416 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1472,639,634 - 72,683,577 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0472,763,282 - 72,807,248 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0473,296,725 - 73,340,685 (+)NCBIUU_Cfam_GSD_1.0
Lmbrd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213225,658,097 - 225,706,678 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365185,679,412 - 5,711,506 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365185,665,075 - 5,713,162 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMBRD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1621,418,059 - 21,462,925 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11621,402,368 - 21,462,976 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21622,432,558 - 22,479,683 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LMBRD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1434,955,946 - 35,008,919 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl434,964,086 - 35,008,906 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607125,283,505 - 25,339,676 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lmbrd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475918,858,846 - 18,897,353 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475918,858,825 - 18,901,956 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lmbrd2
1759 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:882
Count of miRNA genes:471
Interacting mature miRNAs:550
Transcripts:ENSMUST00000090380
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357459Nhdlq7_mnon-HDL QTL 7 (mouse)Not determined15120489829Mouse
1302121Cliff_mcliff drop aversion (mouse)Not determined15120489829Mouse
1300953Bdt5_mbone density traits 5 (mouse)Not determined15120489829Mouse
5491193Mobq4_mmultigenic obesity QTL 4 (mouse)Not determined15120489829Mouse
1301662Faq8_mfluctuating asymmetry QTL 8 (mouse)Not determined15120489829Mouse
1301023Sluc24_msusceptibility to lung cancer 24 (mouse)Not determined15120489829Mouse
4141541Tglq3_mtriglyceride QTL 3 (mouse)Not determined15120489829Mouse
11062069Bpq31_mblood pressure QTL 31 (mouse)15126273195Mouse
4141446Ffaq4_mfree fatty acid QTL 4 (mouse)Not determined127101390Mouse
1300594Eae2_msusceptibility to experimental allergic encephalomyelitis 2 (mouse)Not determined15131218736Mouse
1301136Pgia8_mproteoglycan induced arthritis 8 (mouse)Not determined15324016724388176Mouse
4141358Ath22_matherosclerosis 22 (mouse)Not determined346465237464652Mouse
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15347438971197538Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
11252136Modvl4_mmodifier of vacuolated lens (mouse)15562049439620614Mouse
26884409Bzwq16_mbi-zygomatic width QTL 16, 16 week (mouse)15612948138000244Mouse
26884384Skwq12_mskull length QTL 12, 16 week (mouse)15612948150763396Mouse
26884387Skwq8_mskull length QTL 8, 10 week (mouse)15612948168271849Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15612948171471849Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15612948172471849Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15612948175871849Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15612948176384200Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
26884429Zlq6_mzygomatic length QTL 6, 10 week (mouse)15682948144963396Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15692948175871849Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15692948175871849Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
27095940Ulnl8_mulna length 8, 10 week (mouse)15722948155263396Mouse
27226759Feml17_mfemur length 17, 10 week (mouse)15762948155263396Mouse
27226755Feml22_mfemur length 22, 16 week (mouse)15762948159271849Mouse
27095922Pglq11_mpelvic girdle length QTL 11, 10 week (mouse)15812948438763395Mouse
26884439Sklq11_mskull length QTL 11, 10 week (mouse)15812948447663396Mouse

Markers in Region
D15Mit248  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38159,193,934 - 9,194,081UniSTSGRCm38
MGSCv37159,123,690 - 9,123,837UniSTSGRCm37
Celera159,011,278 - 9,011,425UniSTS
Cytogenetic Map15A1UniSTS
cM Map15 UniSTS
Whitehead_YAC15 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000090380   ⟹   ENSMUSP00000087858
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,140,752 - 9,197,931 (+)Ensembl
GRCm38.p6 Ensembl159,140,665 - 9,197,844 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226149
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,155,620 - 9,165,949 (+)Ensembl
GRCm38.p6 Ensembl159,155,533 - 9,165,862 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227216
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,175,550 - 9,182,673 (+)Ensembl
GRCm38.p6 Ensembl159,175,463 - 9,182,586 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227556   ⟹   ENSMUSP00000154020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,140,637 - 9,202,569 (+)Ensembl
GRCm38.p6 Ensembl159,140,550 - 9,202,483 (+)Ensembl
RefSeq Acc Id: NM_001418870   ⟹   NP_001405799
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39159,140,622 - 9,202,564 (+)NCBI
RefSeq Acc Id: NM_001418874   ⟹   NP_001405803
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39159,140,622 - 9,202,564 (+)NCBI
RefSeq Acc Id: NM_001418875   ⟹   NP_001405804
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39159,186,335 - 9,202,564 (+)NCBI
RefSeq Acc Id: NM_177178   ⟹   NP_796152
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39159,140,622 - 9,202,564 (+)NCBI
GRCm38159,140,570 - 9,197,450 (+)NCBI
MGSCv37159,070,326 - 9,127,206 (+)RGD
Celera158,958,055 - 9,015,060 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_184843
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39159,140,622 - 9,202,564 (+)NCBI
RefSeq Acc Id: XM_006520092   ⟹   XP_006520155
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39159,155,505 - 9,201,569 (+)NCBI
GRCm38159,155,418 - 9,198,320 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_796152   ⟸   NM_177178
- Peptide Label: isoform 1
- UniProtKB: Q501M6 (UniProtKB/Swiss-Prot),   Q3U5C1 (UniProtKB/Swiss-Prot),   Q8BQ06 (UniProtKB/Swiss-Prot),   Q8C561 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006520155   ⟸   XM_006520092
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000087858   ⟸   ENSMUST00000090380
RefSeq Acc Id: ENSMUSP00000154020   ⟸   ENSMUST00000227556
RefSeq Acc Id: NP_001405803   ⟸   NM_001418874
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001405799   ⟸   NM_001418870
- Peptide Label: isoform 1
- UniProtKB: Q8C561 (UniProtKB/Swiss-Prot),   Q501M6 (UniProtKB/Swiss-Prot),   Q3U5C1 (UniProtKB/Swiss-Prot),   Q8BQ06 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001405804   ⟸   NM_001418875
- Peptide Label: isoform 3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8C561-F1-model_v2 AlphaFold Q8C561 1-694 view protein structure

Promoters
RGD ID:6826480
Promoter ID:MM_KWN:18013
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000090380,   NM_013787,   NM_145468,   UC007VFI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36159,070,044 - 9,070,544 (-)MPROMDB
RGD ID:8683384
Promoter ID:EPDNEW_M19723
Type:initiation region
Name:Lmbrd2_1
Description:Mus musculus LMBR1 domain containing 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38159,140,569 - 9,140,629EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444173 AgrOrtholog
Ensembl Genes ENSMUSG00000039704 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000090380 ENTREZGENE
  ENSMUST00000090380.6 UniProtKB/Swiss-Prot
  ENSMUST00000227556 ENTREZGENE
  ENSMUST00000227556.3 UniProtKB/Swiss-Prot
InterPro LMBR1-like_membr_prot UniProtKB/Swiss-Prot
KEGG Report mmu:320506 UniProtKB/Swiss-Prot
MGD MGI:2444173 ENTREZGENE
NCBI Gene 320506 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR-ASSOCIATED PROTEIN LMBRD2 UniProtKB/Swiss-Prot
  UNCHARACTERIZED UniProtKB/Swiss-Prot
Pfam LMBR1 UniProtKB/Swiss-Prot
PhenoGen Lmbrd2 PhenoGen
UniProt LMBD2_MOUSE UniProtKB/Swiss-Prot
  Q3U5C1 ENTREZGENE
  Q501M6 ENTREZGENE
  Q8BQ06 ENTREZGENE
  Q8C561 ENTREZGENE
UniProt Secondary Q3U5C1 UniProtKB/Swiss-Prot
  Q501M6 UniProtKB/Swiss-Prot
  Q8BQ06 UniProtKB/Swiss-Prot