Lrig3 (leucine-rich repeats and immunoglobulin-like domains 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Lrig3 (leucine-rich repeats and immunoglobulin-like domains 3) Mus musculus
Analyze
Symbol: Lrig3
Name: leucine-rich repeats and immunoglobulin-like domains 3
RGD ID: 1557293
MGI Page MGI
Description: Acts upstream of or within otolith morphogenesis. Predicted to be located in cytoplasmic vesicle and plasma membrane. Is expressed in several structures, including central nervous system; dorsal root ganglion; embryo mesenchyme; pancreas tip epithelium; and sensory organ. Orthologous to human LRIG3 (leucine rich repeats and immunoglobulin like domains 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9030421L11Rik; 9130004I02Rik; 9430095K15Rik; leucine-rich repeats and immunoglobulin-like domains protein 3; LIG-3; mKIAA3016
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910125,802,088 - 125,851,228 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10125,802,037 - 125,851,228 (+)EnsemblGRCm39 Ensembl
GRCm3810125,966,219 - 126,015,359 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10125,966,168 - 126,015,359 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710125,403,275 - 125,452,415 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610125,369,225 - 125,418,184 (+)NCBIMGSCv36mm8
Celera10128,374,213 - 128,423,610 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1073.66NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal caudal vertebrae morphology  (IEA)
abnormal craniofacial morphology  (IAGP)
abnormal cranium morphology  (IEA)
abnormal digit morphology  (IEA)
abnormal ear development  (IAGP)
abnormal gait  (IEA)
abnormal heart left ventricle morphology  (IAGP)
abnormal heart left ventricle weight  (IAGP)
abnormal heart morphology  (IEA)
abnormal inner ear development  (IAGP)
abnormal lateral semicircular canal morphology  (IAGP)
abnormal otolith organ morphology  (IAGP)
abnormal posterior semicircular canal morphology  (IAGP)
abnormal skeletal muscle morphology  (IEA)
abnormal skeleton morphology  (IAGP)
abnormal skin morphology  (IEA)
abnormal spleen morphology  (IEA)
abnormal thymus morphology  (IEA)
abnormal vertebrae morphology  (IEA)
abnormal vertebral arch morphology  (IEA)
circling  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased cardiac output  (IAGP)
decreased cardiac stroke volume  (IAGP)
decreased circulating alkaline phosphatase level  (IEA)
decreased circulating glycerol level  (IAGP)
decreased circulating HDL cholesterol level  (IAGP)
decreased circulating insulin level  (IAGP)
decreased lateral semicircular canal size  (IAGP)
decreased posterior semicircular canal size  (IAGP)
enlarged heart  (IEA)
enlarged thymus  (IEA)
female infertility  (IEA)
head tossing  (IAGP)
increased circulating alanine transaminase level  (IEA)
increased circulating aspartate transaminase level  (IEA)
increased circulating creatine kinase level  (IEA)
increased circulating lactate dehydrogenase level  (IEA)
increased heart rate  (IAGP)
increased kidney weight  (IEA)
increased systemic arterial blood pressure  (IAGP)
male infertility  (IEA)
microphthalmia  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
short snout  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11242070   PMID:12477932   PMID:12520002   PMID:12693553   PMID:12904583   PMID:15203213   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16602821   PMID:18554416   PMID:18848646   PMID:18973680   PMID:19004851   PMID:19463158   PMID:20126551   PMID:20562862   PMID:21267068   PMID:21873635  
PMID:22008794   PMID:24086156   PMID:25391964   PMID:26651291   PMID:27009049   PMID:30240734   PMID:34338291  


Genomics

Comparative Map Data
Lrig3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910125,802,088 - 125,851,228 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10125,802,037 - 125,851,228 (+)EnsemblGRCm39 Ensembl
GRCm3810125,966,219 - 126,015,359 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10125,966,168 - 126,015,359 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710125,403,275 - 125,452,415 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610125,369,225 - 125,418,184 (+)NCBIMGSCv36mm8
Celera10128,374,213 - 128,423,610 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1073.66NCBI
LRIG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381258,872,155 - 58,920,504 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1258,872,149 - 58,920,504 (-)EnsemblGRCh38hg38GRCh38
GRCh371259,265,937 - 59,314,285 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361257,552,204 - 57,600,529 (-)NCBINCBI36Build 36hg18NCBI36
Build 341257,552,204 - 57,600,529NCBI
Celera1258,927,578 - 58,975,904 (-)NCBICelera
Cytogenetic Map12q14.1NCBI
HuRef1256,314,531 - 56,362,936 (-)NCBIHuRef
CHM1_11259,233,510 - 59,281,893 (-)NCBICHM1_1
T2T-CHM13v2.01258,852,431 - 58,900,780 (-)NCBIT2T-CHM13v2.0
Lrig3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8763,701,724 - 63,751,898 (+)NCBIGRCr8
mRatBN7.2761,816,313 - 61,866,275 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl761,816,342 - 61,866,481 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0769,213,098 - 69,263,251 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl769,213,147 - 69,263,142 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0769,404,280 - 69,454,372 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4766,012,273 - 66,062,608 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera758,970,827 - 59,020,519 (+)NCBICelera
Cytogenetic Map7q22NCBI
Lrig3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554586,562,167 - 6,601,517 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554586,562,167 - 6,601,517 (-)NCBIChiLan1.0ChiLan1.0
LRIG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21035,419,946 - 35,468,463 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11235,416,855 - 35,465,234 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01230,012,251 - 30,060,570 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11230,275,789 - 30,323,781 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1230,275,498 - 30,323,358 (+)Ensemblpanpan1.1panPan2
LRIG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1102,723,836 - 2,772,630 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl102,724,951 - 2,772,636 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha102,789,369 - 2,838,992 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0102,737,466 - 2,787,369 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl102,739,331 - 2,787,479 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1102,714,388 - 2,764,026 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0102,956,608 - 3,006,074 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0103,082,721 - 3,131,801 (-)NCBIUU_Cfam_GSD_1.0
Lrig3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494555,940,378 - 55,981,106 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366462,886,069 - 2,929,552 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366462,889,331 - 2,929,836 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRIG3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl524,066,623 - 24,117,970 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1524,066,611 - 24,117,971 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2525,903,031 - 25,952,707 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRIG3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11154,806,138 - 54,853,811 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1154,806,579 - 54,853,645 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037191,070,125 - 191,117,716 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrig3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248028,801,280 - 8,848,024 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248028,801,368 - 8,848,718 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lrig3
1703 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:133
Count of miRNA genes:109
Interacting mature miRNAs:124
Transcripts:ENSMUST00000074807
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108515907130530862Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108515907130530862Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108575094130530862Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108575094130530862Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108575094130530862Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108575094130530862Mouse
12911218Frct3a_mfear conditioning traits 3a (mouse)10122785970129466996Mouse
12911220Frct3c_mfear conditioning traits 3c (mouse)10122785970129466996Mouse
12879490Frct3_mfear conditioning traits 3 (mouse)10122785970129466996Mouse
12904001Opfaq10_mopen field activity QTL 10 (mouse)10125633671129466375Mouse

Markers in Region
D10Mit270  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810125,986,128 - 125,986,235UniSTSGRCm38
MGSCv3710125,423,184 - 125,423,291UniSTSGRCm37
Celera10128,394,252 - 128,394,359UniSTS
Cytogenetic Map10D3UniSTS
cM Map1070.0UniSTS
Whitehead Genetic1075.4UniSTS
Whitehead/MRC_RH101403.57UniSTS
BE116579  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810125,990,422 - 125,990,586UniSTSGRCm38
MGSCv3710125,427,478 - 125,427,642UniSTSGRCm37
Celera10128,398,529 - 128,398,693UniSTS
Cytogenetic Map10D3UniSTS
Lrig3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D3UniSTS
cM Map10 UniSTS
Lrig3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D3UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000074807   ⟹   ENSMUSP00000074360
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10125,802,122 - 125,851,228 (+)Ensembl
GRCm38.p6 Ensembl10125,966,253 - 126,015,359 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217813
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10125,802,088 - 125,833,882 (+)Ensembl
GRCm38.p6 Ensembl10125,966,219 - 125,998,013 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218363
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10125,802,037 - 125,803,340 (+)Ensembl
GRCm38.p6 Ensembl10125,966,168 - 125,967,471 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218580
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10125,847,500 - 125,851,103 (+)Ensembl
GRCm38.p6 Ensembl10126,011,631 - 126,015,234 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218593
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10125,822,591 - 125,830,335 (+)Ensembl
GRCm38.p6 Ensembl10125,986,722 - 125,994,466 (+)Ensembl
RefSeq Acc Id: ENSMUST00000219974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10125,848,294 - 125,851,099 (+)Ensembl
GRCm38.p6 Ensembl10126,012,425 - 126,015,230 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220332
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10125,802,103 - 125,843,389 (+)Ensembl
GRCm38.p6 Ensembl10125,966,234 - 126,007,520 (+)Ensembl
RefSeq Acc Id: NM_177152   ⟹   NP_796126
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910125,802,088 - 125,851,228 (+)NCBI
GRCm3810125,966,219 - 126,015,359 (+)ENTREZGENE
MGSCv3710125,403,275 - 125,452,415 (+)RGD
Celera10128,374,213 - 128,423,610 (+)RGD
cM Map10 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_796126   ⟸   NM_177152
- Peptide Label: precursor
- UniProtKB: Q8BS51 (UniProtKB/Swiss-Prot),   Q8BRF0 (UniProtKB/Swiss-Prot),   Q6ZPE6 (UniProtKB/Swiss-Prot),   Q8C5E4 (UniProtKB/Swiss-Prot),   Q6P1C6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000074360   ⟸   ENSMUST00000074807
Protein Domains
Ig-like C2-type   LRRCT   LRRNT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P1C6-F1-model_v2 AlphaFold Q6P1C6 1-1117 view protein structure

Promoters
RGD ID:6819530
Promoter ID:MM_KWN:5843
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_177152,   UC007HHB.1,   UC007HHC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610125,403,006 - 125,403,506 (+)MPROMDB
RGD ID:6846738
Promoter ID:MM_ACW:6283
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:LRIG3.DSEP07,   LRIG3.FSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610125,447,681 - 125,448,181 (+)MPROMDB
RGD ID:8673438
Promoter ID:EPDNEW_M14749
Type:initiation region
Name:Lrig3_1
Description:Mus musculus leucine-rich repeats and immunoglobulin-like domains3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810125,966,249 - 125,966,309EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443955 AgrOrtholog
Ensembl Genes ENSMUSG00000020105 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000074807 ENTREZGENE
  ENSMUST00000074807.8 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
  3.80.10.10 UniProtKB/Swiss-Prot
InterPro Cys-rich_flank_reg_C UniProtKB/Swiss-Prot
  Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_I-set UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Leu-rich_rpt UniProtKB/Swiss-Prot
  Leu-rich_rpt_typical-subtyp UniProtKB/Swiss-Prot
  LRR_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:320398 UniProtKB/Swiss-Prot
MGD MGI:2443955 ENTREZGENE
NCBI Gene 320398 ENTREZGENE
PANTHER IG-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot
  SYNAPTIC ADHESION-LIKE MOLECULE SALM UniProtKB/Swiss-Prot
Pfam I-set UniProtKB/Swiss-Prot
  Ig_3 UniProtKB/Swiss-Prot
  LRR_1 UniProtKB/Swiss-Prot
  LRR_8 UniProtKB/Swiss-Prot
PhenoGen Lrig3 PhenoGen
PRINTS LEURICHRPT UniProtKB/Swiss-Prot
PROSITE IG_LIKE UniProtKB/Swiss-Prot
  LRR UniProtKB/Swiss-Prot
SMART IGc2 UniProtKB/Swiss-Prot
  LRR_SD22 UniProtKB/Swiss-Prot
  LRR_TYP UniProtKB/Swiss-Prot
  LRRCT UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot
  SSF48726 UniProtKB/Swiss-Prot
UniProt LRIG3_MOUSE UniProtKB/Swiss-Prot
  Q3UXP7_MOUSE UniProtKB/TrEMBL
  Q6P1C6 ENTREZGENE
  Q6ZPE6 ENTREZGENE
  Q8BRF0 ENTREZGENE
  Q8BS51 ENTREZGENE
  Q8C5E4 ENTREZGENE
UniProt Secondary Q6ZPE6 UniProtKB/Swiss-Prot
  Q8BRF0 UniProtKB/Swiss-Prot
  Q8BS51 UniProtKB/Swiss-Prot
  Q8C5E4 UniProtKB/Swiss-Prot