Syt16 (synaptotagmin XVI) - Rat Genome Database

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Gene: Syt16 (synaptotagmin XVI) Mus musculus
Analyze
Symbol: Syt16
Name: synaptotagmin XVI
RGD ID: 1556893
MGI Page MGI
Description: Enables identical protein binding activity and phospholipid binding activity. Predicted to be located in membrane. Is expressed in nervous system. Orthologous to human SYT16 (synaptotagmin 16).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6430703N11; Stre; Strep14; synaptotagmin 14-like protein; synaptotagmin XIV-related protein; synaptotagmin-16; syt1; Syt14l; syt14r
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391274,044,490 - 74,314,690 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1274,044,435 - 74,320,041 (+)EnsemblGRCm39 Ensembl
GRCm381273,997,624 - 74,267,916 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1273,997,661 - 74,273,267 (+)EnsemblGRCm38mm10GRCm38
MGSCv371275,098,748 - 75,368,903 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361274,916,599 - 75,186,752 (+)NCBIMGSCv36mm8
Celera1275,111,274 - 75,381,064 (+)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1232.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12801916   PMID:15489334   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750  
PMID:21873635   PMID:30973865   PMID:32325033   PMID:38355793  


Genomics

Comparative Map Data
Syt16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391274,044,490 - 74,314,690 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1274,044,435 - 74,320,041 (+)EnsemblGRCm39 Ensembl
GRCm381273,997,624 - 74,267,916 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1273,997,661 - 74,273,267 (+)EnsemblGRCm38mm10GRCm38
MGSCv371275,098,748 - 75,368,903 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361274,916,599 - 75,186,752 (+)NCBIMGSCv36mm8
Celera1275,111,274 - 75,381,064 (+)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1232.02NCBI
SYT16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381461,812,162 - 62,112,825 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1461,811,974 - 62,112,550 (+)EnsemblGRCh38hg38GRCh38
GRCh371462,278,880 - 62,579,268 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361461,532,294 - 61,638,180 (+)NCBINCBI36Build 36hg18NCBI36
Build 341461,532,490 - 61,637,178NCBI
Celera1442,513,014 - 42,618,887 (+)NCBICelera
Cytogenetic Map14q23.2NCBI
HuRef1442,626,244 - 42,732,142 (+)NCBIHuRef
CHM1_11462,401,963 - 62,507,860 (+)NCBICHM1_1
T2T-CHM13v2.01456,019,035 - 56,320,045 (+)NCBIT2T-CHM13v2.0
Syt16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8698,456,582 - 98,735,306 (+)NCBIGRCr8
mRatBN7.2692,721,415 - 92,972,140 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl692,721,101 - 92,971,748 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0697,076,304 - 97,199,856 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl697,110,158 - 97,198,899 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06106,536,889 - 106,630,139 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.06106,340,012 - 106,466,441 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4696,684,622 - 96,774,478 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera691,177,534 - 91,427,252 (+)NCBICelera
Cytogenetic Map6q24NCBI
Syt16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554667,601,796 - 7,797,793 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554667,600,990 - 7,927,710 (-)NCBIChiLan1.0ChiLan1.0
SYT16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21562,942,429 - 63,243,109 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11462,158,948 - 62,459,623 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01442,412,445 - 42,713,118 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11460,827,456 - 60,958,659 (+)NCBIpanpan1.1PanPan1.1panPan2
SYT16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1836,820,031 - 36,945,267 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl836,839,334 - 36,934,378 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha836,460,224 - 36,697,689 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0836,940,898 - 37,174,933 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl836,940,215 - 37,173,360 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1836,550,398 - 36,784,298 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0836,627,803 - 36,869,264 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0836,990,302 - 37,225,514 (+)NCBIUU_Cfam_GSD_1.0
Syt16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864068,067,673 - 68,201,771 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364955,998,614 - 6,123,440 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364955,998,728 - 6,123,975 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYT16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1190,735,881 - 191,031,684 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11190,735,897 - 191,059,715 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21212,388,776 - 212,464,354 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYT16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12439,180,924 - 39,282,687 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2439,181,068 - 39,280,083 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605327,242,975 - 27,557,915 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Syt16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473439,030,391 - 39,213,851 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473439,030,188 - 39,155,210 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Syt16
6825 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:242
Count of miRNA genes:201
Interacting mature miRNAs:224
Transcripts:ENSMUST00000110451
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
13504832Bacszq2_mbaculum size QTL 2 (mouse)125694579875345787Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126204016496040364Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126214678699466259Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126230825296308252Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126395670897956883Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126834677498766259Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse

Markers in Region
D12Dcr6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381274,233,818 - 74,233,921UniSTSGRCm38
MGSCv371275,334,805 - 75,334,908UniSTSGRCm37
Celera1275,346,935 - 75,347,040UniSTS
Cytogenetic Map12C3UniSTS
cM Map12 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001364281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001422970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001422971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001422972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001422973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB102950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC161591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV348245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB074919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000110451   ⟹   ENSMUSP00000106081
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1274,044,535 - 74,314,685 (+)Ensembl
GRCm38.p6 Ensembl1273,997,761 - 74,267,911 (+)Ensembl
RefSeq Acc Id: ENSMUST00000221073
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1274,044,573 - 74,202,035 (+)Ensembl
GRCm38.p6 Ensembl1273,997,799 - 74,155,261 (+)Ensembl
RefSeq Acc Id: ENSMUST00000221220   ⟹   ENSMUSP00000152623
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1274,044,435 - 74,320,041 (+)Ensembl
GRCm38.p6 Ensembl1273,997,661 - 74,273,267 (+)Ensembl
RefSeq Acc Id: ENSMUST00000221973
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1274,044,551 - 74,208,916 (+)Ensembl
GRCm38.p6 Ensembl1273,997,777 - 74,162,142 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238790   ⟹   ENSMUSP00000158983
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1274,208,991 - 74,314,696 (+)Ensembl
GRCm38.p6 Ensembl1274,162,217 - 74,267,922 (+)Ensembl
RefSeq Acc Id: NM_001364281   ⟹   NP_001351210
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391274,044,551 - 74,314,690 (+)NCBI
GRCm381273,997,777 - 74,267,916 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001364282   ⟹   NP_001351211
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391274,044,551 - 74,314,690 (+)NCBI
GRCm381273,997,777 - 74,267,916 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001364283   ⟹   NP_001351212
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391274,044,551 - 74,314,690 (+)NCBI
GRCm381273,997,777 - 74,267,916 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001364284   ⟹   NP_001351213
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391274,044,551 - 74,314,690 (+)NCBI
GRCm381273,997,777 - 74,267,916 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001364285   ⟹   NP_001351214
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391274,044,551 - 74,314,690 (+)NCBI
GRCm381273,997,777 - 74,267,916 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001422970   ⟹   NP_001409899
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391274,044,551 - 74,314,690 (+)NCBI
RefSeq Acc Id: NM_001422971   ⟹   NP_001409900
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391274,044,551 - 74,314,690 (+)NCBI
RefSeq Acc Id: NM_001422972   ⟹   NP_001409901
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391274,044,551 - 74,314,690 (+)NCBI
RefSeq Acc Id: NM_001422973   ⟹   NP_001409902
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391274,044,551 - 74,314,690 (+)NCBI
RefSeq Acc Id: NM_172804   ⟹   NP_766392
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391274,044,551 - 74,314,690 (+)NCBI
GRCm381273,997,777 - 74,267,916 (+)NCBI
MGSCv371275,098,748 - 75,368,903 (+)RGD
Celera1275,111,274 - 75,381,064 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017315058   ⟹   XP_017170547
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391274,140,059 - 74,314,690 (+)NCBI
GRCm381274,093,282 - 74,267,916 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246702   ⟹   XP_030102562
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391274,044,490 - 74,314,690 (+)NCBI
GRCm381273,997,625 - 74,267,916 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157400   ⟹   XP_036013293
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391274,141,990 - 74,314,690 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157401   ⟹   XP_036013294
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391274,140,059 - 74,314,690 (+)NCBI
Sequence:
RefSeq Acc Id: NP_766392   ⟸   NM_172804
- Peptide Label: isoform 3
- UniProtKB: Q7TN83 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017170547   ⟸   XM_017315058
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030102562   ⟸   XM_030246702
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001351210   ⟸   NM_001364281
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001351211   ⟸   NM_001364282
- Peptide Label: isoform 2
- UniProtKB: Q7TN83 (UniProtKB/Swiss-Prot),   Q6PGM6 (UniProtKB/Swiss-Prot),   Q3UVM4 (UniProtKB/Swiss-Prot),   Q8BJ41 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001351212   ⟸   NM_001364283
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001351214   ⟸   NM_001364285
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001351213   ⟸   NM_001364284
- Peptide Label: isoform 5
RefSeq Acc Id: ENSMUSP00000106081   ⟸   ENSMUST00000110451
RefSeq Acc Id: ENSMUSP00000158983   ⟸   ENSMUST00000238790
RefSeq Acc Id: ENSMUSP00000152623   ⟸   ENSMUST00000221220
RefSeq Acc Id: XP_036013294   ⟸   XM_036157401
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036013293   ⟸   XM_036157400
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001409900   ⟸   NM_001422971
- Peptide Label: isoform 2
- UniProtKB: Q8BJ41 (UniProtKB/Swiss-Prot),   Q7TN83 (UniProtKB/Swiss-Prot),   Q6PGM6 (UniProtKB/Swiss-Prot),   Q3UVM4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001409901   ⟸   NM_001422972
- Peptide Label: isoform 2
- UniProtKB: Q8BJ41 (UniProtKB/Swiss-Prot),   Q7TN83 (UniProtKB/Swiss-Prot),   Q6PGM6 (UniProtKB/Swiss-Prot),   Q3UVM4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001409899   ⟸   NM_001422970
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001409902   ⟸   NM_001422973
- Peptide Label: isoform 2
- UniProtKB: Q8BJ41 (UniProtKB/Swiss-Prot),   Q7TN83 (UniProtKB/Swiss-Prot),   Q6PGM6 (UniProtKB/Swiss-Prot),   Q3UVM4 (UniProtKB/Swiss-Prot)
Protein Domains
C2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TN83-F1-model_v2 AlphaFold Q7TN83 1-639 view protein structure

Promoters
RGD ID:8678534
Promoter ID:EPDNEW_M17298
Type:initiation region
Name:Syt16_1
Description:Mus musculus synaptotagmin XVI , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381273,997,777 - 73,997,837EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2673872 AgrOrtholog
Ensembl Genes ENSMUSG00000044912 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000110451.4 UniProtKB/TrEMBL
  ENSMUST00000221220 ENTREZGENE
  ENSMUST00000221220.2 UniProtKB/Swiss-Prot
  ENSMUST00000238790 ENTREZGENE
  ENSMUST00000238790.2 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.150 UniProtKB/Swiss-Prot
InterPro C2_dom UniProtKB/Swiss-Prot
  C2_domain_sf UniProtKB/Swiss-Prot
  SYT14/14L/16 UniProtKB/Swiss-Prot
KEGG Report mmu:238266 UniProtKB/Swiss-Prot
MGD MGI:2673872 ENTREZGENE
NCBI Gene 238266 ENTREZGENE
PANTHER PTHR46129 UniProtKB/Swiss-Prot
  PTHR46129:SF4 UniProtKB/Swiss-Prot
Pfam PF00168 UniProtKB/Swiss-Prot
PhenoGen Syt16 PhenoGen
PROSITE PS50004 UniProtKB/Swiss-Prot
SMART SM00239 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49562 UniProtKB/Swiss-Prot
UniProt A0A217FL74_MOUSE UniProtKB/TrEMBL
  Q3UVM4 ENTREZGENE
  Q6PGM6 ENTREZGENE
  Q7TN83 ENTREZGENE
  Q8BJ41 ENTREZGENE
  SYT16_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3UVM4 UniProtKB/Swiss-Prot
  Q6PGM6 UniProtKB/Swiss-Prot
  Q8BJ41 UniProtKB/Swiss-Prot