Gm22879 (predicted gene, 22879) - Rat Genome Database

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Gene: Gm22879 (predicted gene, 22879) Mus musculus
Analyze
Symbol: Gm22879
Name: predicted gene, 22879
RGD ID: 15554242
MGI Page MGI
Description: INTERACTS WITH paracetamol (ortholog); sodium fluoride (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC115489587; small nucleolar RNA SNORD36
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 Ensembl - Mouse Genome Assembly GRCm39 Ensembl
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,802,230 - 26,802,303 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,802,230 - 26,802,303 (+)EnsemblGRCm39 Ensembl
GRCm38226,912,218 - 26,912,291 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,912,218 - 26,912,291 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map2A3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Gm22879
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,802,230 - 26,802,303 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,802,230 - 26,802,303 (+)EnsemblGRCm39 Ensembl
GRCm38226,912,218 - 26,912,291 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,912,218 - 26,912,291 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map2A3NCBI
SNORD36B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389133,350,094 - 133,350,164 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9133,350,095 - 133,350,168 (+)EnsemblGRCh38hg38GRCh38
GRCh379136,216,949 - 136,217,019 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369135,206,770 - 135,206,840 (+)NCBINCBI36Build 36hg18NCBI36
Celera9106,767,435 - 106,767,505 (+)NCBICelera
Cytogenetic Map9q34.2NCBI
HuRef9105,716,870 - 105,716,940 (+)NCBIHuRef
CHM1_19136,367,113 - 136,367,183 (+)NCBICHM1_1
T2T-CHM13v2.09145,564,034 - 145,564,104 (+)NCBIT2T-CHM13v2.0
LOC120101211
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8253,207,691 - 53,207,763 (+)NCBIGRCr8
mRatBN7.2251,474,951 - 51,475,023 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl251,474,951 - 51,475,023 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl252,253,275 - 52,253,347 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map2q15NCBI
LOC119873472
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha949,066,506 - 49,066,579 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0950,659,049 - 50,659,122 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl950,659,049 - 50,659,122 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1949,421,485 - 49,421,558 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0949,762,968 - 49,763,041 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0949,840,967 - 49,841,040 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm22879
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:109
Count of miRNA genes:99
Interacting mature miRNAs:109
Transcripts:ENSMUST00000082895
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004941158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL773563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000082895
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,802,230 - 26,802,303 (+)Ensembl
GRCm38.p6 Ensembl226,912,218 - 26,912,291 (+)Ensembl
RefSeq Acc Id: XR_004941158
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,802,230 - 26,802,303 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064829 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082895 ENTREZGENE
MGD MGI:5452656 ENTREZGENE
NCBI Gene LOC115489587 ENTREZGENE
PhenoGen Gm22879 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-02 Gm22879  predicted gene, 22879  LOC115489587  small nucleolar RNA SNORD36  Symbol and/or name change 19259462 PROVISIONAL
2020-06-30 LOC115489587  small nucleolar RNA SNORD36  Gm22879  predicted gene, 22879  Symbol and/or name change 5135510 APPROVED
2020-06-25 Gm22879  predicted gene, 22879  LOC115489587  small nucleolar RNA SNORD36  Symbol and/or name change 19259462 PROVISIONAL
2020-06-19 LOC115489587  small nucleolar RNA SNORD36  Gm22879  predicted gene, 22879  Symbol and/or name change 5135510 APPROVED