SNORD36B (small nucleolar RNA, C/D box 36B) - Rat Genome Database

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Gene: SNORD36B (small nucleolar RNA, C/D box 36B) Homo sapiens
Analyze
Symbol: SNORD36B
Name: small nucleolar RNA, C/D box 36B
RGD ID: 1350667
HGNC Page HGNC:10164
Description: Predicted to be involved in RNA processing. Predicted to be located in nucleolus; INTERACTS WITH paracetamol; sodium fluoride.
Type: snorna
RefSeq Status: VALIDATED
Previously known as: RNU36B; U36b
RGD Orthologs
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389133,350,094 - 133,350,164 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9133,350,095 - 133,350,168 (+)EnsemblGRCh38hg38GRCh38
GRCh379136,216,949 - 136,217,019 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369135,206,770 - 135,206,840 (+)NCBINCBI36Build 36hg18NCBI36
Celera9106,767,435 - 106,767,505 (+)NCBICelera
Cytogenetic Map9q34.2NCBI
HuRef9105,716,870 - 105,716,940 (+)NCBIHuRef
CHM1_19136,367,113 - 136,367,183 (+)NCBICHM1_1
T2T-CHM13v2.09145,564,034 - 145,564,104 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8764399   PMID:9703018   PMID:19446021   PMID:22268729  


Genomics

Comparative Map Data
SNORD36B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389133,350,094 - 133,350,164 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9133,350,095 - 133,350,168 (+)EnsemblGRCh38hg38GRCh38
GRCh379136,216,949 - 136,217,019 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369135,206,770 - 135,206,840 (+)NCBINCBI36Build 36hg18NCBI36
Celera9106,767,435 - 106,767,505 (+)NCBICelera
Cytogenetic Map9q34.2NCBI
HuRef9105,716,870 - 105,716,940 (+)NCBIHuRef
CHM1_19136,367,113 - 136,367,183 (+)NCBICHM1_1
T2T-CHM13v2.09145,564,034 - 145,564,104 (+)NCBIT2T-CHM13v2.0
Gm22879
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,802,230 - 26,802,303 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,802,230 - 26,802,303 (+)EnsemblGRCm39 Ensembl
GRCm38226,912,218 - 26,912,291 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,912,218 - 26,912,291 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map2A3NCBI
LOC120101211
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8253,207,691 - 53,207,763 (+)NCBIGRCr8
mRatBN7.2251,474,951 - 51,475,023 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl251,474,951 - 51,475,023 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl252,253,275 - 52,253,347 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map2q15NCBI
LOC119873472
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha949,066,506 - 49,066,579 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0950,659,049 - 50,659,122 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl950,659,049 - 50,659,122 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1949,421,485 - 49,421,558 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0949,762,968 - 49,763,041 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0949,840,967 - 49,841,040 (+)NCBIUU_Cfam_GSD_1.0


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 9p24.3-q34.3(chr9:204193-138179445) copy number gain See cases [RCV000133791] Chr9:204193..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9q34.11-34.3(chr9:130513207-138124532)x3 copy number gain See cases [RCV000133778] Chr9:130513207..138124532 [GRCh38]
Chr9:133388594..141018984 [GRCh37]
Chr9:132378415..140138805 [NCBI36]
Chr9:9q34.11-34.3		 pathogenic
GRCh38/hg38 9q34.11-34.3(chr9:129068560-138179445)x3 copy number gain See cases [RCV000134916] Chr9:129068560..138179445 [GRCh38]
Chr9:131830839..141073897 [GRCh37]
Chr9:130870660..140193718 [NCBI36]
Chr9:9q34.11-34.3		 pathogenic
GRCh38/hg38 9q33.2-34.3(chr9:121073102-138179445)x3 copy number gain See cases [RCV000134920] Chr9:121073102..138179445 [GRCh38]
Chr9:123835380..141073897 [GRCh37]
Chr9:122875201..140193718 [NCBI36]
Chr9:9q33.2-34.3		 pathogenic
GRCh38/hg38 9q34.13-34.3(chr9:132986903-138114463)x3 copy number gain See cases [RCV000136790] Chr9:132986903..138114463 [GRCh38]
Chr9:135862290..141008915 [GRCh37]
Chr9:134852111..140128736 [NCBI36]
Chr9:9q34.13-34.3		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138124524)x3 copy number gain See cases [RCV000138783] Chr9:193412..138124524 [GRCh38]
Chr9:204090..141018976 [GRCh37]
Chr9:194090..140138797 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9p11.2-q34.3(chr9:193412-138159073)x3 copy number gain See cases [RCV000139207] Chr9:193412..138159073 [GRCh38]
Chr9:68420641..141053525 [GRCh37]
Chr9:67910461..140173346 [NCBI36]
Chr9:9p11.2-q34.3		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138159073)x3 copy number gain See cases [RCV000138962] Chr9:193412..138159073 [GRCh38]
Chr9:204104..141053525 [GRCh37]
Chr9:194104..140173346 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic|conflicting data from submitters
GRCh38/hg38 9p24.3-q34.3(chr9:203861-138125937)x3 copy number gain See cases [RCV000141876] Chr9:203861..138125937 [GRCh38]
Chr9:203861..141020389 [GRCh37]
Chr9:193861..140140210 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9q34.13-34.3(chr9:132386553-138059695)x3 copy number gain See cases [RCV000142636] Chr9:132386553..138059695 [GRCh38]
Chr9:135261940..140954147 [GRCh37]
Chr9:134251761..140073968 [NCBI36]
Chr9:9q34.13-34.3		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:203862-138125937)x3 copy number gain See cases [RCV000143476] Chr9:203862..138125937 [GRCh38]
Chr9:203862..141020389 [GRCh37]
Chr9:193862..140140210 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain See cases [RCV000148113] Chr9:193412..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9q33.2-34.3(chr9:121112395-138075224)x3 copy number gain See cases [RCV000051009] Chr9:121112395..138075224 [GRCh38]
Chr9:123874673..140969676 [GRCh37]
Chr9:122914494..140089497 [NCBI36]
Chr9:9q33.2-34.3		 pathogenic
GRCh38/hg38 9q33.2-34.3(chr9:122792658-138124532)x3 copy number gain See cases [RCV000051040] Chr9:122792658..138124532 [GRCh38]
Chr9:125554937..141018984 [GRCh37]
Chr9:124594758..140138805 [NCBI36]
Chr9:9q33.2-34.3		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain See cases [RCV000050348] Chr9:193412..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138124532)x3 copy number gain See cases [RCV000053745] Chr9:193412..138124532 [GRCh38]
Chr9:204193..141018984 [GRCh37]
Chr9:194193..140138805 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138114463)x3 copy number gain See cases [RCV000053746] Chr9:193412..138114463 [GRCh38]
Chr9:214367..141008915 [GRCh37]
Chr9:204367..140128736 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053748]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053748]|See cases [RCV000053748] Chr9:193412..138179445 [GRCh38]
Chr9:266045..141073897 [GRCh37]
Chr9:256045..140193718 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9q34.11-34.3(chr9:129068560-136495351)x3 copy number gain See cases [RCV000053779] Chr9:129068560..136495351 [GRCh38]
Chr9:131830839..139389803 [GRCh37]
Chr9:130870660..138509624 [NCBI36]
Chr9:9q34.11-34.3		 pathogenic
GRCh38/hg38 9q34.13-34.2(chr9:131406683-133852779)x4 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053812]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053812]|See cases [RCV000053812] Chr9:131406683..133852779 [GRCh38]
Chr9:134282070..136717901 [GRCh37]
Chr9:133271891..135707722 [NCBI36]
Chr9:9q34.13-34.2		 pathogenic
GRCh38/hg38 9q33.2-34.3(chr9:121586837-138179445)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053776]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053776]|See cases [RCV000053776] Chr9:121586837..138179445 [GRCh38]
Chr9:124349116..141073897 [GRCh37]
Chr9:123388937..140193718 [NCBI36]
Chr9:9q33.2-34.3		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:166
Count of miRNA genes:161
Interacting mature miRNAs:165
Transcripts:ENST00000363961
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RP_L7A  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379136,216,045 - 136,216,343UniSTSGRCh37
Build 369135,205,866 - 135,206,164RGDNCBI36
Celera9106,766,531 - 106,766,829RGD
Cytogenetic Map9q34UniSTS
Cytogenetic Map9q34.2UniSTS
HuRef9105,715,966 - 105,716,264UniSTS
GeneMap99-GB4 RH Map9412.7UniSTS
Whitehead-RH Map9495.6UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system nervous system reproductive system
High
Medium
Low
Below cutoff 1 1 4 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000363961
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl9133,350,095 - 133,350,168 (+)Ensembl
RefSeq Acc Id: NR_000017
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389133,350,094 - 133,350,164 (+)NCBI
GRCh379136,216,949 - 136,217,019 (+)RGD
Build 369135,206,770 - 135,206,840 (+)NCBI Archive
Celera9106,767,435 - 106,767,505 (+)RGD
HuRef9105,716,870 - 105,716,940 (+)ENTREZGENE
CHM1_19136,367,113 - 136,367,183 (+)NCBI
T2T-CHM13v2.09145,564,034 - 145,564,104 (+)NCBI
Sequence:
Promoters
RGD ID:6808254
Promoter ID:HG_KWN:65443
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000363961,   UC004CDF.1
Position:
Human AssemblyChrPosition (strand)Source
Build 369135,205,806 - 135,206,306 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
COSMIC SNORD36B COSMIC
Ensembl Genes ENSG00000200831 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000363961 ENTREZGENE
GTEx ENSG00000200831 GTEx
HGNC ID HGNC:10164 ENTREZGENE
Human Proteome Map SNORD36B Human Proteome Map
NCBI Gene 26814 ENTREZGENE
PharmGKB PA34530 PharmGKB
RNAcentral URS00003BC8C2 RNACentral