Tlcd1 (TLC domain containing 1) - Rat Genome Database

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Gene: Tlcd1 (TLC domain containing 1) Mus musculus
Analyze
Symbol: Tlcd1
Name: TLC domain containing 1
RGD ID: 1553488
MGI Page MGI
Description: Predicted to be involved in several processes, including membrane assembly; phospholipid homeostasis; and regulation of membrane lipid distribution. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human TLCD1 (TLC domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 0610007A15Rik; 0610030G03Rik; AA690150; AU015616; calfacilitin; RP23-185A18.3; TLC domain-containing protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,068,956 - 78,071,646 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1178,067,537 - 78,072,735 (+)EnsemblGRCm39 Ensembl
GRCm381178,176,716 - 78,181,019 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,176,711 - 78,181,909 (+)EnsemblGRCm38mm10GRCm38
MGSCv371177,992,268 - 77,994,274 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361177,994,961 - 77,996,967 (+)NCBIMGSCv36mm8
Celera1185,678,639 - 85,680,645 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:16751776   PMID:18799693  
PMID:21677750   PMID:21873635   PMID:30550785  


Genomics

Comparative Map Data
Tlcd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,068,956 - 78,071,646 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1178,067,537 - 78,072,735 (+)EnsemblGRCm39 Ensembl
GRCm381178,176,716 - 78,181,019 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,176,711 - 78,181,909 (+)EnsemblGRCm38mm10GRCm38
MGSCv371177,992,268 - 77,994,274 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361177,994,961 - 77,996,967 (+)NCBIMGSCv36mm8
Celera1185,678,639 - 85,680,645 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
TLCD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381728,724,348 - 28,727,937 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1728,724,348 - 28,727,935 (-)EnsemblGRCh38hg38GRCh38
GRCh371727,051,366 - 27,053,950 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361724,075,503 - 24,077,353 (-)NCBINCBI36Build 36hg18NCBI36
Celera1723,910,529 - 23,913,112 (-)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1723,260,264 - 23,262,847 (-)NCBIHuRef
CHM1_11727,113,836 - 27,116,419 (-)NCBICHM1_1
T2T-CHM13v2.01729,667,155 - 29,669,739 (-)NCBIT2T-CHM13v2.0
Tlcd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81063,572,541 - 63,574,574 (+)NCBIGRCr8
mRatBN7.21063,074,469 - 63,076,502 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1063,074,469 - 63,076,501 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1067,706,756 - 67,708,789 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01067,212,110 - 67,214,143 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01062,683,064 - 62,685,097 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01065,439,104 - 65,441,140 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1065,439,102 - 65,444,001 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01066,193,480 - 66,195,513 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41064,454,775 - 64,456,808 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11064,468,398 - 64,470,431 (-)NCBI
Celera1062,052,068 - 62,054,101 (+)NCBICelera
Cytogenetic Map10q25NCBI
Tlcd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554814,430,895 - 4,433,147 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554814,429,923 - 4,433,147 (+)NCBIChiLan1.0ChiLan1.0
TLCD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21935,732,416 - 35,734,964 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11737,612,938 - 37,615,480 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01728,048,407 - 28,051,086 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11728,554,368 - 28,556,113 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1728,551,715 - 28,556,113 (+)Ensemblpanpan1.1panPan2
TLCD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1942,918,932 - 42,921,098 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl942,919,196 - 42,920,913 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha942,074,752 - 42,076,857 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0943,737,160 - 43,739,265 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl943,737,369 - 43,739,272 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1942,520,316 - 42,522,417 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0942,812,535 - 42,814,638 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0942,890,838 - 42,892,943 (-)NCBIUU_Cfam_GSD_1.0
Tlcd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560242,054,928 - 42,058,997 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365384,933,857 - 4,936,221 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365384,933,920 - 4,936,574 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TLCD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1244,959,453 - 44,962,963 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11244,960,965 - 44,963,023 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21246,946,095 - 46,947,950 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TLCD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11622,492,085 - 22,494,989 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1622,487,975 - 22,494,160 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660757,628,636 - 7,631,116 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tlcd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247861,298,152 - 1,300,370 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247861,298,152 - 1,301,331 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tlcd1
73 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1618
Count of miRNA genes:573
Interacting mature miRNAs:719
Transcripts:ENSMUST00000092880, ENSMUST00000098545, ENSMUST00000108338, ENSMUST00000127587, ENSMUST00000140379, ENSMUST00000141578, ENSMUST00000145507, ENSMUST00000147819
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117220979684731462Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117373754182069425Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
4141365Ltxs3_mlethal factor toxin susceptibility 3 (mouse)Not determined117757387380746358Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse

Markers in Region
AU015616  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,180,159 - 78,180,400UniSTSGRCm38
MGSCv371177,993,661 - 77,993,902UniSTSGRCm37
Celera1185,680,032 - 85,680,273UniSTS
Cytogenetic Map11B5UniSTS
Whitehead/MRC_RH11987.1UniSTS
AA690150  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,180,540 - 78,180,715UniSTSGRCm38
MGSCv371177,994,042 - 77,994,217UniSTSGRCm37
Celera1185,680,413 - 85,680,588UniSTS
Cytogenetic Map11B5UniSTS
Whitehead/MRC_RH11989.56UniSTS
RH124848  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B5UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map10C1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001291235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA671983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG083251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ175335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ543662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000092880   ⟹   ENSMUSP00000090556
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1178,069,477 - 78,072,735 (+)Ensembl
GRCm38.p6 Ensembl1178,178,651 - 78,181,909 (+)Ensembl
RefSeq Acc Id: ENSMUST00000098545   ⟹   ENSMUSP00000096145
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1178,067,537 - 78,071,306 (+)Ensembl
GRCm38.p6 Ensembl1178,176,711 - 78,180,480 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108338   ⟹   ENSMUSP00000103975
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1178,069,588 - 78,070,701 (+)Ensembl
GRCm38.p6 Ensembl1178,178,762 - 78,179,875 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127587   ⟹   ENSMUSP00000114202
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1178,069,511 - 78,071,646 (+)Ensembl
GRCm38.p6 Ensembl1178,178,685 - 78,180,820 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140379
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1178,070,099 - 78,070,917 (+)Ensembl
GRCm38.p6 Ensembl1178,179,273 - 78,180,091 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141578
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1178,069,557 - 78,070,433 (+)Ensembl
GRCm38.p6 Ensembl1178,178,731 - 78,179,607 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145507
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1178,068,975 - 78,070,980 (+)Ensembl
GRCm38.p6 Ensembl1178,178,149 - 78,180,154 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147819   ⟹   ENSMUSP00000126593
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1178,068,956 - 78,070,448 (+)Ensembl
GRCm38.p6 Ensembl1178,178,130 - 78,179,622 (+)Ensembl
RefSeq Acc Id: NM_001291235   ⟹   NP_001278164
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,068,956 - 78,071,646 (+)NCBI
GRCm381178,178,130 - 78,180,820 (+)NCBI
Celera1185,678,022 - 85,680,693 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001291236   ⟹   NP_001278165
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,069,484 - 78,071,646 (+)NCBI
GRCm381178,178,658 - 78,180,820 (+)NCBI
Celera1185,678,022 - 85,680,693 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001291237   ⟹   NP_001278166
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,068,956 - 78,071,646 (+)NCBI
GRCm381178,178,130 - 78,180,820 (+)NCBI
Celera1185,678,022 - 85,680,693 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026708   ⟹   NP_080984
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,069,484 - 78,071,646 (+)NCBI
GRCm381178,178,658 - 78,180,820 (+)NCBI
MGSCv371177,992,268 - 77,994,274 (+)RGD
Celera1185,678,022 - 85,680,693 (+)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011249203   ⟹   XP_011247505
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,069,595 - 78,071,602 (+)NCBI
GRCm381178,178,423 - 78,181,019 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_080984   ⟸   NM_026708
- Peptide Label: isoform a precursor
- UniProtKB: Q8CHT9 (UniProtKB/Swiss-Prot),   Q5SYM9 (UniProtKB/Swiss-Prot),   Q3V372 (UniProtKB/Swiss-Prot),   Q9DCK5 (UniProtKB/Swiss-Prot),   Q99JT6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001278166   ⟸   NM_001291237
- Peptide Label: isoform c
- UniProtKB: Q99JT6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001278164   ⟸   NM_001291235
- Peptide Label: isoform b
- Sequence:
RefSeq Acc Id: XP_011247505   ⟸   XM_011249203
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001278165   ⟸   NM_001291236
- Peptide Label: isoform c
- UniProtKB: Q99JT6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000126593   ⟸   ENSMUST00000147819
RefSeq Acc Id: ENSMUSP00000103975   ⟸   ENSMUST00000108338
RefSeq Acc Id: ENSMUSP00000114202   ⟸   ENSMUST00000127587
RefSeq Acc Id: ENSMUSP00000090556   ⟸   ENSMUST00000092880
RefSeq Acc Id: ENSMUSP00000096145   ⟸   ENSMUST00000098545
Protein Domains
TLC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99JT6-F1-model_v2 AlphaFold Q99JT6 1-247 view protein structure

Promoters
RGD ID:6822327
Promoter ID:MM_KWN:8671
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000108338,   OTTMUST00000000314,   OTTMUST00000000315,   OTTMUST00000000317,   OTTMUST00000000318,   OTTMUST00000000320,   OTTMUST00000000369,   OTTMUST00000000370,   OTTMUST00000000371,   OTTMUST00000000372,   OTTMUST00000000373,   UC007KII.1,   UC007KIJ.1,   UC007KIK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361177,990,101 - 77,993,382 (+)MPROMDB
RGD ID:8675680
Promoter ID:EPDNEW_M15871
Type:initiation region
Name:Tlcd1_1
Description:Mus musculus TLC domain containing 1 , transcript variant 3,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381178,178,723 - 78,178,783EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915572 AgrOrtholog
Ensembl Genes ENSMUSG00000019437 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000092880 ENTREZGENE
  ENSMUST00000092880.14 UniProtKB/Swiss-Prot
  ENSMUST00000098545.12 UniProtKB/Swiss-Prot
  ENSMUST00000108338.2 UniProtKB/Swiss-Prot
  ENSMUST00000127587 ENTREZGENE
  ENSMUST00000127587.8 UniProtKB/Swiss-Prot
  ENSMUST00000147819.8 UniProtKB/TrEMBL
InterPro TLC-dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:68385 UniProtKB/Swiss-Prot
MGD MGI:1915572 ENTREZGENE
NCBI Gene 68385 ENTREZGENE
PANTHER CT120 PROTEIN UniProtKB/Swiss-Prot
  TLC DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot
Pfam TRAM_LAG1_CLN8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tlcd1 PhenoGen
PROSITE TLC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART TLC UniProtKB/Swiss-Prot
UniProt E9PY70_MOUSE UniProtKB/TrEMBL
  Q3V372 ENTREZGENE
  Q5SYM9 ENTREZGENE
  Q8CHT9 ENTREZGENE
  Q99JT6 ENTREZGENE
  Q9DCK5 ENTREZGENE
  TLCD1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3V372 UniProtKB/Swiss-Prot
  Q5SYM9 UniProtKB/Swiss-Prot
  Q8CHT9 UniProtKB/Swiss-Prot
  Q9DCK5 UniProtKB/Swiss-Prot